Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1301 ATGTTGTATGTTTTCTCACTCGTCCAACCTATTTTCCTTCATGCCTTATCCGCCTCCATCCACCTTTTCTTGCTCGTGTCGGTGTCTCTGCATTGGCTTTGGAACAAAGTCACATTCACACCACCAGCAGCCAGGGAAGAAAAATCTAAGGAGGAGAAACACAGACCCAATAGCAATAACACCCTCTTCAAAACGACCGTGTTTTGTTCTCTTGCTGTTTCTGCTTTCAGTTTCGTCCTCTGTTTGTTCAATTACTTCTACTGGTACACAAGTGGCTGGTCAGAGCAAAATCTCGTGACCTTTTTGGATTTGGCTCTCAAAACACTTGCTTGGGGCGTTGTTTCTGTTTCCCTGCACAATGGTTTCTCATTCTTCTTCACTGAAAAAAAAAGGTTCAGGTTCTCATTCTTCTTCGGAGCTTGGTGCACCTTCTACCTCGTTTTTTCTTGCTATTCCTTCGTTGTTGGCATTGTTGTTCTCCCCGAGAGACCAATTCAGTACTTGGTTTCCGATGTTGTTTCCACTTGTGCGGGGTTCTTCTTCTGTTACGTGGCTTATTTTGTGAAAAACAAGGGATGCGCTAAGGGTATTGAGGAGCCTCTTTTGAATGGTGATGCAAATGTTCCTAATGAAAAAGTGGCCAAGGGTGGGGACACTGTTACCCCTTTCTCACATGCTGGAGTTTTCAGCGTTCTTACTTTCTCTTGGGTGGGTCCTCTTGTGGCTGTTGGCAACAAGAAAACCTTGGACCTTGAGGATGTTCCTCAACTAGACACCAAAGATAGTGTAGTTGGCGCTTTTCCGAGTTTCAGGGATAAACTTGAAGCTGATTGTGATGCAAATGCAATTAATAGTATCACCACACTTAAGCTAGTGAAGAATTTAGCAAAGTCAGCTTGGAAGGAGATTCTCTTCACAGCTTTTCTTGCATTGTTGAACACCCTGGCTTCATATGTTGGTCCTTATCTTATTGATGTTTTTGTTCAGTACCTTGATGGACGACGGCAGTATGAAAACCAGGGCTATGTGCTGGTTTTTGTGTTTTTCTTTGCGAAGATTGTAGAGTGCCTTTCCCAAAGGCATTGGTTCTTTAGGTTGCAGCAAATTGGAATTCGAATGCGAGCGCTGCTTGTCACCATGATCTATAACAAGGCTCTCACCCTTTCTTGTCAGTCAAAGCAAGGCCACACCTCTGGGGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTTGGTAACTTCAGTTGGTACATGCATGATTTGTGGATGGTGGCGCTGCAAGTCGTGTTGGCCTTGTTGATTTTGTATAAGAGCCTTGGCCTTGCTTCAATTGCTGCTCTTGTTGCAACCGTTGTTGTTATGTTGGCAAATGTTCCCTTGGGATCATTGCAGGAGAAGTTTCAAAATAAGTTGATGGAGTCAAAAGATACAAGAATGAAGGCCACATCCGAGATTTTGAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCAAAAGTAATCGAGCTCAGGAAAACTGAGCAAGGCTGGTTAAAGAAATATGTTTATACTGCAGCCATGACCACATTTGTGTTCTGGGGTGCCCCCACATTTATATCTGTGGTTACTTTTGGTACTTGTATGCTGATAGGGATCCCCCTTGAATCAGGAAAGATCTTGTCCGCACTTGCAACATTCCGGATTCTTCAAGAGCCCATTTATAATCTTCCTGATACAATTTCAATGATAGCACAGACTAAAGTTTCTCTTGATAGGATTTCATCATTCCTTTGTCTTGATGACTTACGGTCTGATGTTGTAGAGAAGCTTCCCAGGGGCAGTTCTGATACAGCAATTGAAGTAATTGATGGAACCTTTTCTTGGGATTTATCTTCCCCTAACCCAAAGTTGCAAAATATAAATATCAAAGTTTTTCATGGGATGAGGGTTGCGGTTTGTGGTACTGTTGGATCGGGCAAGTCTACTTTGCTTTCTTGTGTACTGGGAGAAGTACCAAAGATATCAGGCATTCTTAAGGTTTGCGGAACAAAGGCCTATGTTGCTCAGTCTCCATGGATACAGAGTGGTAAGATAGAGGATAATATATTGTTTGGTGAACGCATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCCTGCTCCCTAAAGAAGGATCTGGAGATTTTGTCATTTGGGGATCAGACTGTCATAGGAGAACGTGGAATAAACTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCACGTGCTCTTTACCAAGATGCTGATATATATCTATTTGACGATCCTTTTAGTGCTGTGGATGCTCACACAGGTTCTCACCTCTTCAAGGAATGCTTGCTGGGCCTTTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGACCTTATATTGGTCATGAAAGATGGTAAAATTACTCAATGTGGAAAGTATACCGATCTGCTTAATAGTGGGACTGATTTCATGGAACTTGTTGGTGCACACAAAAAAGCTTTGTCTACACTAGATTCATTGGATGAAGTGGCAAAATCTAATGAAATAAGTACCTTGGAACAAGACGTTAATGTCTCTAGCCCGCATGTTTTTAAGGAAAAAGAGGCAAGCAGAGAAGAACCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGGTTTCTGGTGTATTGGAATTATATCACAACAGCATATGGAGGAGCTCTGGTACCTTTCATATTGTTGGCCCAGATTCTTTTTGAAGCTCTTCAAATTGGGAGCAATTATTGGATGGCTTGGGCAACACCCATCTCAACAGATGTGGAACCACCTGTTGGAGGAACGACACTTATAGTAGTCTATGTTGTTCTGGCCGTTGGAAGTTCTTTCTGCGTCCTTGTCAGATCAATGCTTCTTGTCACAGTTGGTTACAAGACAGCTACCATACTATTCAATAAAATGCACTTCTGCATTTTCCGTGCTCCAATGTCATTTTTCGATTCCACTCCAAGTGGGCGAGTCCTTAACAGAGCTTCAACTGACCAAAGTACAGTGGATACTGACATTCCTTATCAAATTGGCTCATTTGCCTTCTCTATGATCCAGCTTCTGGGAATTATAGCAGTGATGTCTCAGGTTGCATGGCAAGTTTTCATTGTCTTTATACCTGTGATAGCAGTCAGCATCTGGTATCAGCAATATTATATACCGTCAGCTCGAGAACTATCACGTTTAGTTGGAGTCTGCAAAGCCCCAATCATTCAACACTTTGCTGAAACAATTTCTGGTACTTCAACCATTAGAAGTTTTGATCAGCAGTCAAGATTTCAGGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATATTGCTGGTGCCATGGAATGGTTGTGCTTCCGCTTAGATATGTTGTCTTCTATCACATTTGCATTTTCCTTAATATTCTTAATTTCTATTCCAACGGGAATCATAGATCCAGGCATTGCTGGTTTAGCTGTTACATATGGACTTAATTTGAACATGATACAAGCTTGGGTGATATGGAATCTCTGTAATTTGGAGAATAAAATTATATCAGTAGAAAGAATACTTCAATATACTAGTATTCCTTGCGAGCCTCCCCTTGTTGTAGAAGACAATCGGCCAGATCCTTCTTGGCCCTTGTATGGTGAGGTTGACATACAAGATTTGCAGGTTCGTTATGCTCCACATCTTCCACTTGTGTTGCGTGGTCTTACATGCAAATTTCATGGAGGAATGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCCACTCTCATTCAGACACTTTTCCGAATTGTAGAGCCTACTTCTGGGCAAGTTATGATTGACAACATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACAGTGAGAAATAATCTGGACCCCCTGGAAGAGTACACTGATGAACAAATCTGGGAGGCCTTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCCACAGTTAGTGAGAATGGTGAGAATTGGAGCATGGGGCAGAGGCAGTTGGTCTGCCTTGGTAGAGTGCTGCTTAAAAAAAGCAAGGTTTTGGTCCTTGATGAAGCCACTGCATCAGTCGACACAGCTACGGATAATTTGATTCAGCAAACTCTTAGGCAACATTTTTCTGACTCTACAGTTATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTTAGCCAAGGACTTATTGAGGAGTATGACACTCCAACAACTTTGCTAGAAAATAAGTCGTCTTCTTTTGCTCAACTTGTTGCAGAGTATACCATGAGGTCCAAATCCAGTTTTGAGAAATCTGTTGATCACTGA 4467 0.4173 MLYVFSLVQPIFLHALSASIHLFLLVSVSLHWLWNKVTFTPPAAREEKSKEEKHRPNSNNTLFKTTVFCSLAVSAFSFVLCLFNYFYWYTSGWSEQNLVTFLDLALKTLAWGVVSVSLHNGFSFFFTEKKRFRFSFFFGAWCTFYLVFSCYSFVVGIVVLPERPIQYLVSDVVSTCAGFFFCYVAYFVKNKGCAKGIEEPLLNGDANVPNEKVAKGGDTVTPFSHAGVFSVLTFSWVGPLVAVGNKKTLDLEDVPQLDTKDSVVGAFPSFRDKLEADCDANAINSITTLKLVKNLAKSAWKEILFTAFLALLNTLASYVGPYLIDVFVQYLDGRRQYENQGYVLVFVFFFAKIVECLSQRHWFFRLQQIGIRMRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGNFSWYMHDLWMVALQVVLALLILYKSLGLASIAALVATVVVMLANVPLGSLQEKFQNKLMESKDTRMKATSEILRNMRILKLQGWEMKFLSKVIELRKTEQGWLKKYVYTAAMTTFVFWGAPTFISVVTFGTCMLIGIPLESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRISSFLCLDDLRSDVVEKLPRGSSDTAIEVIDGTFSWDLSSPNPKLQNINIKVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGERMDRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYTDLLNSGTDFMELVGAHKKALSTLDSLDEVAKSNEISTLEQDVNVSSPHVFKEKEASREEPKGQLVQEEEREKGKVGFLVYWNYITTAYGGALVPFILLAQILFEALQIGSNYWMAWATPISTDVEPPVGGTTLIVVYVVLAVGSSFCVLVRSMLLVTVGYKTATILFNKMHFCIFRAPMSFFDSTPSGRVLNRASTDQSTVDTDIPYQIGSFAFSMIQLLGIIAVMSQVAWQVFIVFIPVIAVSIWYQQYYIPSARELSRLVGVCKAPIIQHFAETISGTSTIRSFDQQSRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPTGIIDPGIAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERILQYTSIPCEPPLVVEDNRPDPSWPLYGEVDIQDLQVRYAPHLPLVLRGLTCKFHGGMKTGIVGRTGSGKSTLIQTLFRIVEPTSGQVMIDNINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSTVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTTLLENKSSSFAQLVAEYTMRSKSSFEKSVDH* 1489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1301 1488 CDD ABCC_MRP_domain1 618 818 - -
Gso18g1301 1488 CDD ABC_6TM_ABCC_D1 305 592 IPR044746 GO:0140359
Gso18g1301 1488 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1238 1472 IPR003439 GO:0005524
Gso18g1301 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1229 1469 IPR027417 -
Gso18g1301 1488 Pfam ABC transporter 636 770 IPR003439 GO:0005524
Gso18g1301 1488 Pfam ABC transporter 1256 1403 IPR003439 GO:0005524
Gso18g1301 1488 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 584 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g1301 1488 SUPERFAMILY ABC transporter transmembrane region 919 1220 IPR036640 GO:0005524|GO:0016021
Gso18g1301 1488 Pfam ABC transporter transmembrane region 921 1163 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g1301 1488 Pfam ABC transporter transmembrane region 304 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g1301 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 840 IPR027417 -
Gso18g1301 1488 ProSitePatterns ABC transporters family signature. 743 757 IPR017871 GO:0005524
Gso18g1301 1488 SUPERFAMILY ABC transporter transmembrane region 293 596 IPR036640 GO:0005524|GO:0016021
Gso18g1301 1488 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 841 IPR003439 GO:0005524
Gso18g1301 1488 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 108 1484 - -
Gso18g1301 1488 Gene3D ABC transporter type 1, transmembrane domain 280 600 IPR036640 GO:0005524|GO:0016021
Gso18g1301 1488 Gene3D ABC transporter type 1, transmembrane domain 880 1218 IPR036640 GO:0005524|GO:0016021
Gso18g1301 1488 CDD ABC_6TM_ABCC_D2 919 1213 IPR044726 GO:0140359
Gso18g1301 1488 Gene3D - 1221 1474 IPR027417 -
Gso18g1301 1488 SMART AAA_5 645 818 IPR003593 -
Gso18g1301 1488 SMART AAA_5 1264 1457 IPR003593 -
Gso18g1301 1488 Gene3D - 602 864 IPR027417 -
Gso18g1301 1488 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g1301 1488 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 108 1484 - -
Gso18g1301 1488 CDD ABCC_MRP_domain2 1236 1456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1301 Gso-Chr18 34844766 34850904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1301 618 859 Calmodulin-binding Proteins AT2G36910 29.961 6.66e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1301 - K05666 gmx:100794567 2910.94