Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1297 ATGGAAGAAGACTTCGACATCCCCGGCGGCGAGGAAATGGATCTCGGCGAAGACGAGGTCGGCGAGGAGAGGGAGATCGGCTCTGGCGGCCTCAAGAAGAAGCTCCTCAAGGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGTGACGAAGTCCAAGTTCATTACACGGGGACTTTGCTCGACGGGATTAAGTTCGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCTACTATTCCTCCTAATGCTACACTCCAATTTGATGTTGAGCTGCTGTCATGGACTAGTGTAAAGGACATATGCAAGGATGGCGGTATATTTAAGAAGATAATTACTGAGGGGGAGAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTTTAGCAAAGTCTGATGGGGAGGAGTTCACAGTCAGAGAGGGTCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGGGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCATGGAAAACTGTTTCAGAAGTAACTGATGACAAGAAGGTCATAAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGTGAAACTAATTGGTAAGCTACAAGATGGTACCGCTTTTTTGAAAAAGGGCCATGATGAAGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGGAACAAGTTGTTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGGTGAGGTTGCGTTGTTGACCATTGCACCTGATTATGCTTTCGGTACATCAGAGTCCCAACAGGAGTTGGCTGTAGTTCCTCCTAACTCAACCGTGTATTTTGAAGTTGAGCTAGTGTCATTTGAGAAAGAGAAGGAGTCCTGGGATCTGAACACTGAAGAGAAACTTGAAGCTGCTGGTAAGAAGAAAGAAGAGGGAAATGTCTTGTTTAAAGCTAGTAAATATGCAAGAGCTTCCAAAAGATATGAAAAGGCCGTGAAGTACATAGAATATGATTCCTCCTTTGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTGAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTACAAAGAAGCAGAGAAATTGTGTACTAAGGTGTTGGACCTTGAGAGTACAAATGTGAAAGCCCTCTATAGAAGGGCCCAAGCACATATGCAGTTGACTAACTTGGATTTGGCTGAACTTGACATTAAGAAAGCTCTTGACATTGACCCTAACAACAGGGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGA 1635 0.4361 MEEDFDIPGGEEMDLGEDEVGEEREIGSGGLKKKLLKEGQGWETPEVGDEVQVHYTGTLLDGIKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIITEGEKWENPKDPDEVLVKYEVHLENGKLLAKSDGEEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKLQDGTAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPDYAFGTSESQQELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKASKYARASKRYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLESTNVKALYRRAQAHMQLTNLDLAELDIKKALDIDPNNRDVKLEYRTLKEKVKENNRKEAQFYGNMINKMTKIGS* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1297 544 SUPERFAMILY TPR-like 380 538 IPR011990 GO:0005515
Gso18g1297 544 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 373 544 - -
Gso18g1297 544 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 260 - -
Gso18g1297 544 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 262 373 - -
Gso18g1297 544 SUPERFAMILY FKBP-like 140 256 - -
Gso18g1297 544 Gene3D - 140 253 IPR046357 GO:0003755
Gso18g1297 544 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 164 253 IPR001179 GO:0003755
Gso18g1297 544 Pfam Tetratricopeptide repeat 475 507 IPR013105 -
Gso18g1297 544 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 159 250 IPR001179 GO:0003755
Gso18g1297 544 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 275 371 IPR001179 GO:0003755
Gso18g1297 544 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 43 133 IPR001179 GO:0003755
Gso18g1297 544 SMART tpr_5 391 424 IPR019734 GO:0005515
Gso18g1297 544 SMART tpr_5 474 507 IPR019734 GO:0005515
Gso18g1297 544 SMART tpr_5 440 473 IPR019734 GO:0005515
Gso18g1297 544 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 48 136 IPR001179 GO:0003755
Gso18g1297 544 MobiDBLite consensus disorder prediction 1 31 - -
Gso18g1297 544 Gene3D Tetratricopeptide repeat domain 377 534 IPR011990 GO:0005515
Gso18g1297 544 SUPERFAMILY FKBP-like 258 391 - -
Gso18g1297 544 MobiDBLite consensus disorder prediction 1 21 - -
Gso18g1297 544 PANTHER PEPTIDYLPROLYL ISOMERASE 373 544 - -
Gso18g1297 544 PANTHER PEPTIDYLPROLYL ISOMERASE 262 373 - -
Gso18g1297 544 PANTHER PEPTIDYLPROLYL ISOMERASE 1 260 - -
Gso18g1297 544 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515
Gso18g1297 544 SUPERFAMILY FKBP-like 23 149 - -
Gso18g1297 544 Coils Coil 507 527 - -
Gso18g1297 544 Gene3D - 24 139 IPR046357 GO:0003755
Gso18g1297 544 Gene3D - 254 375 IPR046357 GO:0003755
Gso18g1297 544 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 281 374 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1297 Gso-Chr18 34752976 34757917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1297 20 542 Calmodulin-binding Proteins AT3G25230 80.497 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1297 K09571 - gmx:100781128 1057.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1297 18 34752976 34757917 Gso16g0706 16 11101819 11107167 GST
Gso18g1297 18 34752976 34757917 Gso16g0708 16 11118201 11121774 PCT
Gso18g1297 18 34752976 34757917 Gso3g0760 3 27235573 27239666 PCT
Gso16g0708 16 11118201 11121774 Gso18g1297 18 34752976 34757917 PCT
Gso3g0760 3 27235573 27239666 Gso18g1297 18 34752976 34757917 PCT