Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1288 ATGGAAAACCAATTCTTTCTCAATGCTGGTGTGCCCCCTCAGCTGCATTTTGAGCCTTCACCACACGGTCACCAACCTTGTCCACCACCCTCTTGGCAATCATCACTGTCTTCTGCCATGGATGTTCAAGTCACCGTTTTGAATTGTTCAACTGAGCAGACCCAGGATTGCTTCTACAACACCACCCCAACATGGGACAAGTCAACGGATCATGGCCTTCAGTTTGATTCAGCTCTGAGTTCAATGGTGTCCTCTCCTGCAGCCTCCAATTCCAACATATCAAGTGAGAATTTTGTCATCAGGGAATTGATAGGAAAATTGGGAAACATTGGTGGTGGTGGTGGTTCAGATGAGATCTCACCTCATTCTCAGCCTTTGGTTGGTGCATCTTTCTACATCAATTGCAATAATAATAGCACCAACACTTCATGTTATAGCACCCCTTTGAGTTCTCCTCCAAAGGTGAACACGATCAAGATCCCCACAATGGTGAACCACTTGGTGAAGGAGGGCATGCCCCCAAGTTTGGAGACACCAATGTCCTTGAATTCCACTGTGGCTAAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCATGCTTTGGAAGTCGGAGTTTGAATGGCAGGACCACCCAATTGGGACTCAACAATGCTGAATTGGCTCAGAGATCTTCATTGGTGGAAAATGGGAAGCGGCTCCCTAGAGTCTCAAGTAGTCCATCACTCAAAGTGCTTGAATCTCAAATGGGTACTCAGGAGAACAAAAATTCTCGATTGCAAGACCTAATGGAATTGGCCAATTCTCAAGAGGAATCCACAATCTCTGAACAGACCCCAAATGGGGACACTGGGGTGAAGCCTTCCCCTTATGTGAATTCTAGGAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAAGAAACTTCAGCCTCTATTAACCCCCCTATGGCTGCTGAAGCTAGTGAAGACTGGAATGCGAAACGCAGCAAGCCTAATGCGGGTGAGGGGAATGAAAATTGCCAAGTTAAGGCAGAGGAAGAGTCCAAAGGGGGTAATAGTAATGCAAATGATGAGAAACAGAACAAGAGTAACTCAAAACCTCCTGAACCTCCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCCACTGATAGTCATAGTCTTGCAGAAAGAGTTCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTCACGGGTAAAGCACTAATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCTGATAGATTCCTCAGCACCACCCTTTTATGGGCAACACCCTCAGCCAAACCCAGCAGTCCACAATAACATTCCTAATGGAACTATGACCCACAACTCAGTGGACCCATTAGATACTGGTTTGTGCCAAAACCTTGGCATGCATTTACCACACCTAAATGATTTTAATGAAGGTGGTTCTCAGTATGCAAAACCATTCTCTGAAGATGACCTCCACACCATTATTCAGATGGGATTTGGCCAAAATGCAAATAGGATAACACCAATACAATCTCAGAGTTTCAACGGCTCAAATCAAGTACCCCTATGA 1743 0.4418 MENQFFLNAGVPPQLHFEPSPHGHQPCPPPSWQSSLSSAMDVQVTVLNCSTEQTQDCFYNTTPTWDKSTDHGLQFDSALSSMVSSPAASNSNISSENFVIRELIGKLGNIGGGGGSDEISPHSQPLVGASFYINCNNNSTNTSCYSTPLSSPPKVNTIKIPTMVNHLVKEGMPPSLETPMSLNSTVAKFSADPGFAERAAKFSCFGSRSLNGRTTQLGLNNAELAQRSSLVENGKRLPRVSSSPSLKVLESQMGTQENKNSRLQDLMELANSQEESTISEQTPNGDTGVKPSPYVNSRKRKGPSKGKAKETSASINPPMAAEASEDWNAKRSKPNAGEGNENCQVKAEEESKGGNSNANDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHPIFLIDSSAPPFYGQHPQPNPAVHNNIPNGTMTHNSVDPLDTGLCQNLGMHLPHLNDFNEGGSQYAKPFSEDDLHTIIQMGFGQNANRITPIQSQSFNGSNQVPL* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1288 580 Coils Coil 246 266 - -
Gso18g1288 580 MobiDBLite consensus disorder prediction 233 377 - -
Gso18g1288 580 Pfam Helix-loop-helix DNA-binding domain 390 437 IPR011598 GO:0046983
Gso18g1288 580 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 386 436 IPR011598 GO:0046983
Gso18g1288 580 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 384 455 IPR036638 GO:0046983
Gso18g1288 580 MobiDBLite consensus disorder prediction 235 291 - -
Gso18g1288 580 Gene3D - 383 458 IPR036638 GO:0046983
Gso18g1288 580 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 577 IPR024097 GO:0006355
Gso18g1288 580 Coils Coil 433 453 - -
Gso18g1288 580 CDD bHLH_AtBPE_like 376 461 - -
Gso18g1288 580 MobiDBLite consensus disorder prediction 12 35 - -
Gso18g1288 580 SMART finulus 392 442 IPR011598 GO:0046983
Gso18g1288 580 PANTHER BHLH TRANSCRIPTION FACTOR 2 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1288 Gso-Chr18 34363335 34368305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1288 1 544 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.599 1.68e-105 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso18g1288 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1288 - - gmx:100787699 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1288 18 34363335 34368305 Gso16g0703 16 10962709 10966345 GST
Gso18g1288 18 34363335 34368305 Gso16g0703 16 10962709 10966345 PCT
Gso18g1288 18 34363335 34368305 Gso3g0765 3 27418903 27422678 PCT
Gso16g0703 16 10962709 10966345 Gso18g1288 18 34363335 34368305 PCT
Gso3g0765 3 27418903 27422678 Gso18g1288 18 34363335 34368305 PCT