Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1280 ATGGCAGAACCGTCGTCCACCGCCGCCACCATCGCTACCGCTGATCCTCCGGTTCCAGCGACCAAAAGCTGGGCCGACGAAGCGGACGAAGAAACCAACGCCTCCACCGCCGAGGCAGAAACCTCCTCCGTTAACCTGGAAGCGTTAACCATCGACGACAAAGAAAAGAACTCTTCAAAACTCTTGGACGACCCCGACGATTCTAATATTCAAGCGGTTACTTCTGGCGATACGCCGTACACGTCGGCAGCGAGGTTCGAGGACCTAAGCCTCTCGCCAGAGCTTTTGAAGGGGCTCTATGTGGAGATGAAGTTTGAGAAGCCGAGCAAGATCCAGGCTATCAGTTTGCCGATGATCCTTAGCCCGCCCAATCGGGACCTGATTGCGCAGGCACACAATGGCTCTGGCAAGACGACTTGCTTCGTGCTTGGGATGCTTAGCCGTGTCGATCCAAAGGTGCAGGCTCCACAGGCGCTCTGCATCTGCCCCACCCGGGAGCTGGCCATTCAGAACATCGAGGTGCTCCGCAGGATGGGGAAGTACACGGGGATTGCATCCGAGTGCCTTGTGCCATTGGACCGGGATGCGGTTCATGTATCGAAAAGGGCACCTATTATGGCACAGGTGGTGATTGGGACCCCAGGGACAGTCAAGAAGTTTATTAGCTTCAAGAAACTTGGGACCACGAGGTTGAGGATTCTTGTTTTCGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAGAGATGATTCCCTGAGGATAATGAAAGATATAGAAAAAGAGAATTCTAAGTGTCAGGTTCTTTTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCGTTTCAAGGACAGTCAGGATGGATCATAATAAACTCTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTGTATTGTCCTGATGAACTTGCTAAGATTGATGTGGTAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACAATTATATTTGTGCGCTCAAAAATTACTGCAAGATTAACACATGAAGCACTTGTTAAGTTGGGCTATGAGGTTACATCTATACAAGGTTCTCTTAGTAATGAAGAGAGAGACAAAGTTGTCAAGGAGTTCAAAGATGGTTTGACCCAAGTTCTTATATCAACAGATATTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATGATCTTCCCAAGAAATACGGTGTACGTGATGAGCCAGATTATGAAGTGTATTTGCACAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGGTGAATTGGATGAAAGGCTCATGTCGAAGATCGAGAACCATTTTGGCACTCGTGTAACTGAGGTGCGAGCACAAAGTGTTGAAGAATATAAAGCTGCTCTCAAGGAAGCCGGTTTACTGCAATGA 1467 0.469 MAEPSSTAATIATADPPVPATKSWADEADEETNASTAEAETSSVNLEALTIDDKEKNSSKLLDDPDDSNIQAVTSGDTPYTSAARFEDLSLSPELLKGLYVEMKFEKPSKIQAISLPMILSPPNRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNIEVLRRMGKYTGIASECLVPLDRDAVHVSKRAPIMAQVVIGTPGTVKKFISFKKLGTTRLRILVFDEADQMLAEDGFRDDSLRIMKDIEKENSKCQVLLFSATFNDTVKNFVSRTVRMDHNKLFVKKEELSLDAVKQYKVYCPDELAKIDVVKDYIFEIGENVGQTIIFVRSKITARLTHEALVKLGYEVTSIQGSLSNEERDKVVKEFKDGLTQVLISTDILARGFDQQQVNLVINYDLPKKYGVRDEPDYEVYLHRVGRAGRFGRKGAVFNLICGELDERLMSKIENHFGTRVTEVRAQSVEEYKAALKEAGLLQ* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1280 488 MobiDBLite consensus disorder prediction 49 63 - -
Gso18g1280 488 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 84 113 IPR014014 GO:0003724
Gso18g1280 488 Pfam DEAD/DEAH box helicase 110 281 IPR011545 GO:0003676|GO:0005524
Gso18g1280 488 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 63 467 - -
Gso18g1280 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 448 IPR027417 -
Gso18g1280 488 SMART helicmild6 348 437 IPR001650 -
Gso18g1280 488 Pfam Helicase conserved C-terminal domain 323 437 IPR001650 -
Gso18g1280 488 CDD SF2_C_DEAD 306 446 - -
Gso18g1280 488 Gene3D - 63 299 IPR027417 -
Gso18g1280 488 CDD DEADc_DDX19_DDX25 91 287 - -
Gso18g1280 488 PANTHER DEAD-BOX HELICASE DBP80 63 467 - -
Gso18g1280 488 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 478 IPR001650 -
Gso18g1280 488 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 293 IPR014001 -
Gso18g1280 488 MobiDBLite consensus disorder prediction 1 76 - -
Gso18g1280 488 Gene3D - 300 485 IPR027417 -
Gso18g1280 488 SMART ultradead3 104 309 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1280 Gso-Chr18 33180608 33185046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1280 66 469 Eukaryotic Initiation Factors Gene Family AT3G19760 34.653 3.84e-67 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1280 K18655 - gmx:100778091 938.332