Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1274 ATGTCTCATCAGGAGCAAGCCTTAGTGTCCCTTCTCTCTCAGCTCGCCCTTTCCTTGGATGGTGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCCGTCCGCACCCTCTTCAAATTCACCGCCACCTCCTCCGCCCTCCGCAAGCTCCGCCGCGCCCCCTCCCTCTCTGTCTCCGACCTCCGATCCCTCCTCGCCGAGATACCCTCCGACGGCGACGGAAACTCCAAGGGTGGCATAATCGTAATTGTCCGCGGCACCGTCGACGCCAAGTCAGCCGTCGATGGCACCTGGAAAACCCTGAGACCTGGTGTCTTGGTTTCTCGCGAGTCCGGCGATAAAGGCGTTATTCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGACAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTCTTCTAACTGATGTTGGACGGCGGCCAAATGCTGAGTATGTTGTTGTAAACATGGATGGCTCAAGACATCCTTTACCTTTGACAACAGTCTATCATAAATTGCAACCAATAACTGCTTCTCCTTATACTTTTTTGCAAGCACTTTTTGGGCATGAATATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCATTGGGGAAGGATATCACTGCTGTTGGCCTTTGCAGTTTAAAAAATGGAATTGCTGAAATTAAGTCGTGCAAATATCTACCATATTTTCTGTCTGACTTGAGTAAAGATCAGATGATAATGGATCTTTCCATCAAAACAAAAATACTGTTTTGGGGTGGTATTGCTCTTGGTTCAATGTCAGTTGGGGTCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAGCGGTGAGTGATGTTGAACCTCAGATGGATGATGAGATTGAAGATGCTCCAGATGGACAATTATGTGTTATATGTCTAATGAGGAGAAGGCGTTCTGTCTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGTGAAGTGGCACCCAAATGTCCCGTTTGTCGTCAGGAGATCCGAGATTCAGTGCGGATTTATGAATCTTGA 1164 0.4751 MSHQEQALVSLLSQLALSLDGAVLGFALAYAAVRTLFKFTATSSALRKLRRAPSLSVSDLRSLLAEIPSDGDGNSKGGIIVIVRGTVDAKSAVDGTWKTLRPGVLVSRESGDKGVILQRTQTCIYNEWKGLFGWTSDLRAIFARSWRQQESTSLRKVPFLLTDVGRRPNAEYVVVNMDGSRHPLPLTTVYHKLQPITASPYTFLQALFGHEYPVGLLDEEKILPLGKDITAVGLCSLKNGIAEIKSCKYLPYFLSDLSKDQMIMDLSIKTKILFWGGIALGSMSVGVLGYAVVRNWNKWKQWKQQRQLQQQRQAVSDVEPQMDDEIEDAPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRDSVRIYES* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1274 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 IPR044247 GO:0004842
Gso18g1274 387 SMART ring_2 335 374 IPR001841 -
Gso18g1274 387 Pfam E3 Ubiquitin ligase 141 288 IPR022170 GO:0004842|GO:0006996|GO:0016567
Gso18g1274 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 - -
Gso18g1274 387 SUPERFAMILY RING/U-box 334 380 - -
Gso18g1274 387 Pfam Zinc finger, C3HC4 type (RING finger) 333 380 - -
Gso18g1274 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 387 IPR013083 -
Gso18g1274 387 ProSiteProfiles Zinc finger RING-type profile. 335 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1274 Gso-Chr18 32457580 32462537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1274 326 384 C3H Transcription Factor Family AT3G06140 35.593 9.03e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1274 K15688 - gmx:100811939 721.465