LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso18g1271	ATGGTTTTCTTCGCCTCCGTTTCAAACTCTAATCAATGCCGAAAACAAACCTTGTTGTTTATATTTACCATCTTCACTTTGTTCCATACACTCTTTACCACTGTAGTATCCCTTTCCTTCAACTCTTCAACCTTCCAACTAAACTCAAATAATCTAATAGACTTTAAGGGTGATGCTTTTTCCTCAAATGGTGTTCTTCAGCTCACAAAGAACCAAATTGATGACAAAATCACATTCAGCGTTGGTCGAGCCTCGTATAACCAACCAGTGAGGCTTTGGGATGGAAGAACCAAGAAGCTCACTGATTTCACAACCCACTTTTCTTTTGTCATGAAAGCTATTGACCCATCACGGTTTGGTGATGGGTTAGCCTTCTTCCTTGCACCATTTGATTCTGTCCTCCCAAACAATTCAGCTGGTGGGTACCTTGGCCTATTCAGCAATGAATCCGCATTCAACACTAAGAAAAATCAGTTAGTTGCGGTTGAGTTCGACAGCTTCAAAAATGAATGGGATCCGAGCTCTGATCATGTAGGAATCAATGTCAACTCCATTCAATCTGTTACAAATGTCACTTGGAAGAGCAGCATTAAGAACGGATCGGTCGCTAATGCCTGGATATGGTACAACTCTACAACCAAAAATCTCTCTGTGTTCCTTACTTATGCTAATAATCCAACTTTTAATGGCAATTCTAGTCTTTGGTATGTCATTGACTTGAGGGACGTGTTGCCAGAGTTTGTTAGAATAGGCTTTTCAGCGGCCACAGGTTCATGGATTGAAATACACAACATTTTGTCTTGGTCATTCAGTTCAAGCTTGGATGAGGGTAGTAGGAAAAAGGTGAAGGTTGGTTTAGTGGTTGGTTTAAGTGTTGGTTTGGGTTGTTTAGTTTGTGTTGTAGGCCTATTATGGTTTACGTTTTGGAGAAGGAAAAATAAAGGAAAGGAGGACAACTTAGGTGTTGATGCTTCTATAGATGATGAGTTTGAGAGAGGAACTGGCCCAAAGAGGTTCACCTATCCAGAACTAAGCAACGCAACCAACAACTTTGCAGAAGAAGGAAAGCTAGGAGAAGGAGGATTTGGAGGTGTTTACAAAGGCATAGTTGTACACTCCAACCTTGAAGTGGCAGTGAAGAGGGTTTCAAAAGGGTCAAAACAAGGGAAAAAGGAATACGTGTCAGAAGTGAGAGTAATCAGCCGGCTGAGGCATAGAAACTTGGTTCAACTCATAGGGTGGTGCCATGAACAAGGTGAGCTCCTTCTTGTTTATGAATACATGCCTAATGGAAGCCTTGATTCTCATCTGTTTGGAAATAGAGTCATGCTTTCATGGGTGGTGAGACACAAGGTGGCCTTAGGTTTAGCATCTGCTCTTCTTTATCTTCATGAAGAGTGGGAACAATGTGTGGTGCATAGAGACATCAAGTCAAGTAATGTCATGTTGGATGCAAATTTCAATGCCAAACTTGGTGACTTTGGTCTTGCAAGGCTAGTAGACCATGAACTTGGTTCTCAAACCACTGTTTTGGCAGGCACAATGGGGTACCTAGCCCCAGAGTGTGTCACCACAGGAAAATCCAGCAAGGAGTCTGATGTGTACAGCTTTGGTGTTGTTGCACTTGAAATCACATGTGGTAGAAAACCAGTGGAAGTGAGAGAAGAACCTAGTAAAGTAAGGCTTGTGGAGTGGGTGTGGAGCCTCTATGGAAAAGGGAAACTACTTGAAGCAGCTGATCAGAAACTGAATTGGGAATTTGAAGAACAGCAAATGGAATGTTTGATGATTGTTGGGTTGTGGTGTTGTCATCCTGATCATACCATGAGGCCCTCCATTAGGCAGGTGATTAGTGTCCTCAACTTTGAAGCCCCTTTGCCAAGTCTTCCATCCAAGTTGCCTGTGCCAATGTATTATGCACCTCCAATGGATATGTGCAAATTCTCCTACACTTCATCTGGTGTTACTAGCACAACCAAAGCATCTTCCCCATACTCATCAATCTCGGAAGGGTCCGGAAAATCTCTATTAAAGCACTAA	2040	0.424	MVFFASVSNSNQCRKQTLLFIFTIFTLFHTLFTTVVSLSFNSSTFQLNSNNLIDFKGDAFSSNGVLQLTKNQIDDKITFSVGRASYNQPVRLWDGRTKKLTDFTTHFSFVMKAIDPSRFGDGLAFFLAPFDSVLPNNSAGGYLGLFSNESAFNTKKNQLVAVEFDSFKNEWDPSSDHVGINVNSIQSVTNVTWKSSIKNGSVANAWIWYNSTTKNLSVFLTYANNPTFNGNSSLWYVIDLRDVLPEFVRIGFSAATGSWIEIHNILSWSFSSSLDEGSRKKVKVGLVVGLSVGLGCLVCVVGLLWFTFWRRKNKGKEDNLGVDASIDDEFERGTGPKRFTYPELSNATNNFAEEGKLGEGGFGGVYKGIVVHSNLEVAVKRVSKGSKQGKKEYVSEVRVISRLRHRNLVQLIGWCHEQGELLLVYEYMPNGSLDSHLFGNRVMLSWVVRHKVALGLASALLYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEITCGRKPVEVREEPSKVRLVEWVWSLYGKGKLLEAADQKLNWEFEEQQMECLMIVGLWCCHPDHTMRPSIRQVISVLNFEAPLPSLPSKLPVPMYYAPPMDMCKFSYTSSGVTSTTKASSPYSSISEGSGKSLLKH*	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso18g1271	679	SUPERFAMILY	Protein kinase-like (PK-like)	335	647	IPR011009	-
	Gso18g1271	679	CDD	STKc_IRAK	365	621	-	-
	Gso18g1271	679	Pfam	Protein kinase domain	352	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso18g1271	679	SUPERFAMILY	Concanavalin A-like lectins/glucanases	36	275	IPR013320	-
	Gso18g1271	679	Gene3D	Transferase(Phosphotransferase) domain 1	428	641	-	-
	Gso18g1271	679	MobiDBLite	consensus disorder prediction	656	673	-	-
	Gso18g1271	679	ProSiteProfiles	Protein kinase domain profile.	351	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso18g1271	679	Gene3D	Phosphorylase Kinase; domain 1	336	427	-	-
	Gso18g1271	679	PANTHER	RECEPTOR LECTIN KINASE	28	653	-	-
	Gso18g1271	679	SMART	serkin_6	351	620	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso18g1271	679	ProSitePatterns	Legume lectins alpha-chain signature.	244	253	IPR000985	-
	Gso18g1271	679	CDD	lectin_legume_LecRK_Arcelin_ConA	38	274	IPR001220	GO:0030246
	Gso18g1271	679	Gene3D	-	36	287	-	-
	Gso18g1271	679	ProSitePatterns	Legume lectins beta-chain signature.	160	166	IPR019825	-
	Gso18g1271	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	471	483	IPR008271	GO:0004672\|GO:0006468
	Gso18g1271	679	ProSitePatterns	Protein kinases ATP-binding region signature.	357	380	IPR017441	GO:0005524
	Gso18g1271	679	PANTHER	-	28	653	-	-
	Gso18g1271	679	MobiDBLite	consensus disorder prediction	656	679	-	-
	Gso18g1271	679	Pfam	Legume lectin domain	37	278	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso18g1271	Gso-Chr18	31834974	31837247	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso18g1271	18	639	Receptor kinase-like Gene Family	AT5G10530	53.071	0.0	614

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gso18g1271		Pkinase	5.5e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso18g1271	-		-	gmx:100777201	1272.69