Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1265 ATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTATTATGTTCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTTAACAGGGATGCAAAGTCGTGCTTGGAAAGGTGGAAGAACTACCTCAAGCCTGACATAAAAAAAGGTTCTCTTACCGAAGAAGAGCAGCGTCTTGTCATCCGCCTTCAAGCAAAATACGGGAACAAATGGAAGAAAATCGCTGCAGAAGTCCCAGGGCGCACTGCTAAGCGGTTAGGCAAGTGGTGGGAAGTCTTCAAAGAGAAGCAGCAGAGAGAGAAAAAGGATGTCAATAGAATCTCCGACCCAATTAACAATAGTAAGTACGAGCACATACTTGAGAGTTTTGCAGAGAAACTAGTGAAGGAACGCCCTTCACCATCATTTTTAATGGCTGCTTCCAATGGGGCATTTCTGCACACCGATACACCAGCACCTGCATCATCCTTGCTTCCTTCTTGGCTTTCTAATTCTAGTAGTCCTGCCGCTGATGGGCCAAGTTCCCTTTCGGTGACACTAAGTCTTTCTTCCTCAATGGTGATCGCGCCTCCATTTTCATGGTTGCCACCCAAGAGAGGACCAGACAATGCTCCTTTTGTTTTGGGGAATGCAGCAGCACTTCAGGGAGTTATTCCAACTCTAAGTGATAACATGCTTATGTCTCAGATGGTGGAGCACCGTAAAGAGTTGGAAGAGGGGCATCGTGCTTTGGGCACACACAAGAAGGAGGCAGCTTGGAGGTTAAGTCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGACAAACCGAAGAAGGGAGAAGATTGAAGAATTTGAAGCAAAAATTAAAGCTCTTCAAGAAGAGGAGCTAGCTGCTTTGGGTAGAATTGAAGCAGAATACAGAGAACAGTTAGATGCATTAAGGAGAGATGCTGAAAACAAGGAGCAAAAGTTGGCAGAACAATGGGCTGCAAAGCATTTGCGGCTTACTAGGTTACTAGAGCAATTAGGGTGCAGAGCAGGGCTCCCTTAG 1059 0.4627 MKERQRWRAEEDALLCSYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPDIKKGSLTEEEQRLVIRLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKDVNRISDPINNSKYEHILESFAEKLVKERPSPSFLMAASNGAFLHTDTPAPASSLLPSWLSNSSSPAADGPSSLSVTLSLSSSMVIAPPFSWLPPKRGPDNAPFVLGNAAALQGVIPTLSDNMLMSQMVEHRKELEEGHRALGTHKKEAAWRLSRVELQLESEKTNRRREKIEEFEAKIKALQEEELAALGRIEAEYREQLDALRRDAENKEQKLAEQWAAKHLRLTRLLEQLGCRAGLP* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1265 352 SMART sant 3 55 IPR001005 -
Gso18g1265 352 SMART sant 58 106 IPR001005 -
Gso18g1265 352 Gene3D - 62 127 - -
Gso18g1265 352 CDD SANT 6 53 IPR001005 -
Gso18g1265 352 Gene3D - 4 58 - -
Gso18g1265 352 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Gso18g1265 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Gso18g1265 352 Coils Coil 265 330 - -
Gso18g1265 352 CDD SANT 63 104 IPR001005 -
Gso18g1265 352 Pfam Myb-like DNA-binding domain 7 68 - -
Gso18g1265 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Gso18g1265 352 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 349 - -
Gso18g1265 352 PANTHER TRANSCRIPTION FACTOR AS1 1 349 IPR031055 GO:0005634|GO:0006351|GO:0010338
Gso18g1265 352 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Gso18g1265 352 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1265 Gso-Chr18 31096588 31099896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1265 1 352 MYB Transcription Factor Family AT2G37630 61.290 6.25e-142 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g1265 Myb_DNA-bind_6 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1265 K09422 - gmx:100809813 665.996