Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1238 ATGATTTTTCTGAAACAGATAAATTCTTCTTCCTCCATGCTTTCTTTCAAAGGGAGTCCATACTGGATGGCACCCGAGGTTGTAATGAATACAAATGGCAATAGTCTTCCTGTTGATATATGGAGTTTGGGATGCACAATTCTTGAAATGGAAACATCAAAGCCTCCTTGGAATCAGTATGAAGGGGTAGCTGCAATATTTAAAATTGGTAACAGCAGAGATATGCCTGAAATTCCTGAGATATGCCTTGGATCTTGGGTTCTTGAGCTCTCGTCTGAACGGCCTCAGAATCTGCTTCCCCAAATTGCCACCCACACCCCTCACTGCTTCTCCCTTCCCCACACCCCTCCCTATCGTTGCCAATAA 366 0.4399 MIFLKQINSSSSMLSFKGSPYWMAPEVVMNTNGNSLPVDIWSLGCTILEMETSKPPWNQYEGVAAIFKIGNSRDMPEIPEICLGSWVLELSSERPQNLLPQIATHTPHCFSLPHTPPYRCQ* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1238 121 SUPERFAMILY Protein kinase-like (PK-like) 6 82 IPR011009 -
Gso18g1238 121 ProSiteProfiles Protein kinase domain profile. 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1238 121 Gene3D Transferase(Phosphotransferase) domain 1 3 108 - -
Gso18g1238 121 Pfam Protein kinase domain 5 69 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1238 121 PANTHER MAP KINASE KINASE KINASE 4 80 - -
Gso18g1238 121 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 4 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1238 Gso-Chr18 29135598 29136320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1238 5 80 MAP Kinase Kinase Kinase AT1G53570 76.316 1.02e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso18g1238 Pkinase 6.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1238 K04421 - gmx:102660333 257.299