Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1232 ATGGTTAGCATGGAGAGAAAAACAAAGAATGAAAATGGGTCTATTGGGTTTGGATCCATTTTCATGCATGCCGATGGCAAAGATTTGCTTCTCATGGTTTTAGGTACCATTGGGGCTGTTGGGGAAGGCTTGGCCACCCCTCTAGTGTTGTATATCAGTAGCCGCATGATGAATAACATTGGGAGTTCCTCTAACATGGATGGAAACACTTTCATCCATAACATCAATAAGAATGCAGTGGCTTGGTTATATTTGGCTGGTGCCTCTTTTGCGGTTTGCTTCCTCGAGGGTTATTGTTGGACAAGAACAAGCGAAAGACAAGCAGCGAAAATGAGATGCAGTTATCTGAAAGCAGTGCTCAGACAAGATGTGGCATACTTCGATTTGCAAGTCACAAGCACGTCCGATATCATCACTAGCGTCTCCGGCGACAGCATCGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCGAATTTCTTGATGAACATTTCATTGTTCGTTGGGAGCTACATAGCGGCTTTTGCAATGTTGTGGAGGTTGGCCATTGTGGGGTTTCCTTTCGTGGTTCTTCTTGTGATCCCGGGTTTAATATACGGCAAGACTTTGATTGGCTTGTCTAGTAAAATCAGAGAAGAGTATAACCAAGCTGGGACAGTGGCGGAACAAACAATTTCGTCCATCAGAACCGTTTTTTCATTTGTGGGGGAAAGCAAGACCATGAACGCTTTCTCCAACGCGCTTCAAGGGACGGTTAAGTTGGGCCTGAAACAAGGCTTGACTAAGGGATTAGCCATTGGAAGCAACGGCGTCGTTTTCGGCATTTGGTCCTTCATGTGCTACTACGGTAGCAGACTCGTCATTTATCATGACGCCAAAGGAGGGACAGTTTTTGCAGTCGGAGCAGCAATCGCCGTTGGTGGATTGGCATTAGGGGCGGGTTTATCCAACATGAAGTACTTCTCGGAGGCGGTGGCGGTAGCGGAGCGTATAAAGGAAGTGATCAAGAGGGTTCCCAAGATAGATTCTGACAACAAGGATGGGCAAACCCTGGAAAAATTTTACGGGGAAGTGGAATTTGACCGAGTCGAATTCGCATACCCGTCGAGACCCGAAAGTGCGATTTTGAAAGGGCTGAGCCTGAAGGTTCCAGCAGGGAAGAGAGTGGCGTTGGTGGGGGAGAGTGGCTCAGGGAAATCAACAGTGATAGCTTTATTACAGAGGTTTTATGACCCTGTTGGGGGAGAGGTGCTTCTGGACGGGATGATGGGCATCCAGAAGCTGCAGGTGAAGTGGGTGAGGTCGCAGATGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTTGCGACCAGCATTAAAGAGAACATACTTTTCGGCAAAGAGGATGCCACGGAGGACCAGGTGGTTGAGGCTGCAAAAGCTGCTCATGCTCATAATTTCATTTCGCTTCTGCCTCACGGTTACCATACACAGGTGGGAGAGAGGGGAATTCAGATGTCAGGGGGACAAAAACAGAGAATAGCAATTGCGAGGGCAATAATTAAGAAACCGCGAATTCTTCTTCTGGACGAAGCAACAAGCGCACTGGACTCAGAGTCAGAGCGACTCGTCCAAGAAGCGTTGGACAATGCAGCCGCGGGTTGCACCGCCATCATCATCGCGCACCGCTTATCCACAATCCAAAACGCAGACCTCATCGCCGTCGTCGGAGGCGGAAAAATCATAGAGATGGGCTCGCACGACGAGCTCATCCAAAACGACACCGGCGCATACGCCTCCACGTTTCGCCTCCAGCAACAAATGGACAAAGAGAAAGTAGAGGAAAGCACGGAAAAAACCGTTACTCCACGGATTATTTTATCAACTACAGACACCGAAAACGTGGGACCTAATTTAATAGGTCCCACGATATTCAGTAATCATGATGATGATGTGGGGGAAGGGAAGAAGGTGGCAGCACCATCAGTCAGGAGACTGATGGCGCTGAGCGTTCCCGAGTGGAAGCATGCCGTTTTGGGGTGTCTGAATGCGATGGTTTTCGGTGCCGTTCAGCCGGTATACGCATTCACGATGGGGTCCACGATACTTTTGTATTTTCACGCGGATCATGAGGAGATAGCGACGAGGACGAGGATCTACTCGTTCGCCTTTCTGGGTCTCTTCGTGGTGTCATTGCTTGCGAATATTGGGCAGCATTATTGCTTCGGCTACATGGGGGAATACTTGACCAAACGGGTCAGAGAGACCGTGCTTGCCAAAATCCTCACTTTCGAAGTTGGGTGGTTTGATTTGGACCAAAACTCTAGTGCCTCCATCTGTTCCAGACTTGCCAAAGATGCTAATGTGGTAAGGTCTCTAGTGGGAGATAGAATGGCATTGCTGGTACAAACATTTTCAGCGGTAATAACAGCCTACACGATGGGTCTTGTCATTTCTTGGAGGCTTTCCATCGTCATGATAGCTGTGCAACCTATCATCATAGCATGCTTTTACACAAGGCGTGTGCTTCTCAAGAGCATGTCCAACAAATCCGTGAAGGCCCAACAACAAAGCAGCAACATAGCTTCTGAAGCAGTTTCGAATCTTAGAACTGTCACAGCTTTTTCTTCTCAAGACAGGATTCTCAAAATGCTTGAAGAGGCCCAACAAGGCCCAAGTCAAGAGAACATAAGACAATCTTGTTTTGCTGGCATTGGGCTTGGATGCTCCCAGGGCCTTGCATCTTGCATTTGGGCCTTGAATTTTTGGTATGGTGGCAAGCTTATCTCATGTGGGTACATCTCAATAAAAACATTCTTGGAGAGCTTCATGGTTTTGGTGAGCACGGGAAGGATCATTGCAGATGCGGGAAGCATGACCACGGATCTCGCTAGAGGTGCTGATGTAGTTGGTGATATTTTTGGGATCATTGATCGTCGTACAAAGATTGAGCCGGATGATCCAAATGGGTACATGCTAGAGAGGTTAATTGGTCAAATAGAGCTTCATGACGTGCATTTTGCGTACCCTGCTAGGCCTAATGTTGCTATCTTTGAAAATTTCTCGATGAAAATTGAGGCAGGGAAATCAACAGCATTGGTGGGGCAAAGTGGGTCCGGGAAATCGACCATCATAGGGCTAATAGAGAGGTTTTATGATCCACTTAAAGGGATGGTGACAATAGATGGCATGAACATAAAATTGTATAACCTAAAGTCACTAAGGAAGCACATAGCACTAGTGAGCCAAGAGCCAACGTTGTTTGGTGGGACCATAAGGGAGAACATTGCATATGGAAGGTGTGAAAGGGTTGATGAGAGTGAGATCATAGAGGCAGCACAAGCGGCGAACGCGCACGATTTCATAGCTAGCTTGAAGGAAGGGTACGAGACATGGTGTGGGGAAAAAGGGGTGCAACTTTCAGGGGGTCAAAAGCAGAGGATAGCAATAGCAAGGGCAATACTGAAAAACCCTAAGGTGTTGTTGTTGGATGAGGCCACAAGCGCATTAGATGGTCAATCAGAGAAGGTGGTGCAAGATACGTTGATGAGGTTGATGATAGGGAGGACCAGCGTGGTAGTGGCACATAGGTTGAGCACCATACACAATTGTGATGTTATTGGTGTGTTGGAAAAGGGGAAGGTGGTGGAGATTGGAACCCATTCGTCCTTGTTGGCCAAAGGACCATGTGGAGCTTATTACTCCTTGGTGAGTCTTCAGACGAGACATGCAGCCACACCAAATAACACTAATTGTACTAAAGCTAGTAGTATCCACTCTATCAATTGA 3762 0.475 MVSMERKTKNENGSIGFGSIFMHADGKDLLLMVLGTIGAVGEGLATPLVLYISSRMMNNIGSSSNMDGNTFIHNINKNAVAWLYLAGASFAVCFLEGYCWTRTSERQAAKMRCSYLKAVLRQDVAYFDLQVTSTSDIITSVSGDSIVIQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFVVLLVIPGLIYGKTLIGLSSKIREEYNQAGTVAEQTISSIRTVFSFVGESKTMNAFSNALQGTVKLGLKQGLTKGLAIGSNGVVFGIWSFMCYYGSRLVIYHDAKGGTVFAVGAAIAVGGLALGAGLSNMKYFSEAVAVAERIKEVIKRVPKIDSDNKDGQTLEKFYGEVEFDRVEFAYPSRPESAILKGLSLKVPAGKRVALVGESGSGKSTVIALLQRFYDPVGGEVLLDGMMGIQKLQVKWVRSQMGLVSQEPALFATSIKENILFGKEDATEDQVVEAAKAAHAHNFISLLPHGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERLVQEALDNAAAGCTAIIIAHRLSTIQNADLIAVVGGGKIIEMGSHDELIQNDTGAYASTFRLQQQMDKEKVEESTEKTVTPRIILSTTDTENVGPNLIGPTIFSNHDDDVGEGKKVAAPSVRRLMALSVPEWKHAVLGCLNAMVFGAVQPVYAFTMGSTILLYFHADHEEIATRTRIYSFAFLGLFVVSLLANIGQHYCFGYMGEYLTKRVRETVLAKILTFEVGWFDLDQNSSASICSRLAKDANVVRSLVGDRMALLVQTFSAVITAYTMGLVISWRLSIVMIAVQPIIIACFYTRRVLLKSMSNKSVKAQQQSSNIASEAVSNLRTVTAFSSQDRILKMLEEAQQGPSQENIRQSCFAGIGLGCSQGLASCIWALNFWYGGKLISCGYISIKTFLESFMVLVSTGRIIADAGSMTTDLARGADVVGDIFGIIDRRTKIEPDDPNGYMLERLIGQIELHDVHFAYPARPNVAIFENFSMKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGMVTIDGMNIKLYNLKSLRKHIALVSQEPTLFGGTIRENIAYGRCERVDESEIIEAAQAANAHDFIASLKEGYETWCGEKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDGQSEKVVQDTLMRLMIGRTSVVVAHRLSTIHNCDVIGVLEKGKVVEIGTHSSLLAKGPCGAYYSLVSLQTRHAATPNNTNCTKASSIHSIN* 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1232 1253 Gene3D - 347 597 IPR027417 -
Gso18g1232 1253 SMART AAA_5 384 579 IPR003593 -
Gso18g1232 1253 SMART AAA_5 1018 1213 IPR003593 -
Gso18g1232 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 991 1228 IPR003439 GO:0005524
Gso18g1232 1253 Pfam ABC transporter 1010 1159 IPR003439 GO:0005524
Gso18g1232 1253 Pfam ABC transporter 375 525 IPR003439 GO:0005524
Gso18g1232 1253 Gene3D ABC transporter type 1, transmembrane domain 20 957 IPR036640 GO:0005524|GO:0016021
Gso18g1232 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 596 IPR027417 -
Gso18g1232 1253 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 330 - -
Gso18g1232 1253 CDD ABC_MTABC3_MDL1_MDL2 991 1231 - -
Gso18g1232 1253 Gene3D - 982 1241 IPR027417 -
Gso18g1232 1253 SUPERFAMILY ABC transporter transmembrane region 27 341 IPR036640 GO:0005524|GO:0016021
Gso18g1232 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g1232 1253 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1239 - -
Gso18g1232 1253 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1239 IPR039421 -
Gso18g1232 1253 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524
Gso18g1232 1253 ProSitePatterns ABC transporters family signature. 1131 1145 IPR017871 GO:0005524
Gso18g1232 1253 SUPERFAMILY ABC transporter transmembrane region 652 976 IPR036640 GO:0005524|GO:0016021
Gso18g1232 1253 Pfam ABC transporter transmembrane region 32 300 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g1232 1253 Pfam ABC transporter transmembrane region 671 938 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g1232 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 980 1231 IPR027417 -
Gso18g1232 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 675 956 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g1232 1253 CDD ABC_6TM_Pgp_ABCB1_D2_like 658 974 - -
Gso18g1232 1253 CDD ABC_MTABC3_MDL1_MDL2 357 596 - -
Gso18g1232 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 357 594 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1232 Gso-Chr18 28245487 28262202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1232 4 1231 Calmodulin-binding Proteins AT2G36910 43.530 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1232 K05658 - gmx:100791575 2363.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1232 18 28245487 28262202 Gso8g2839 8 46075738 46083375 GST