Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1223 ATGGCTGCTACATTTCCTCAACAACTTCTGGTGAAGCCAATCCACTTTTTCAAGATCATAACCGCTCACAATGTTCATGAAGGAAAGCTAATGATCCCAAATAAGTTTGTGAAGAAATATGGAAAACGCTTACAAAATACTCTATTTCTGAAGACTCCAAATGGTGCTGAATGGAAAATGATTTTGAAAAAACGTGACGGTAAAATATGGTTTCAAAAGGGATGGAAAGAGTTTGCAGAGTATCACTCTCTAGCTCATGGCCATCTTTTGGTTTTCAGATGGGATGTAACTTCTCATTTTCAGGTACACATCTTTGATTTGAGTGCCTTAGAGATTGAGTACCCTACCGAAATAATAAAAGGTAAAACAGCCTCCAATAGAAAAGGAAATGAATCTCCAGGTGATGAACATTTGGAGTGTCACAGATCAGGTCAAAAGAGAAAAGTTAACTCAGTTGAATTTCTTCAACAATGTCAAATGAGAAGTCGCAAGTGTGTTAAAGTTGAGAACACGATGATACTGCCAAGGCAGGCTCTGCATCACACTGCCACAAAATGCAAAGGAAAATCGAAGGCTATGGATAACCAAGTTACAGCTCTTGATAGAGCAAGTTCTTTCAAATCTTGTAATCCATTCTTCTTGACCGTCATGCATCGAACCCACATCAGTTCTCACGGTAGTCTGAACTTACCAATGAAGTTCTGTAGGAGTCACCTTGATTTGCACAAGAAGCGGAGACTTATCAGCCTTCAGGTGTTAAGTGGGAGAATTTGGCCTGCAAAGTATCAGATCCATAAACAAAAGACTGCTATAAGATTTAAACTCTCATGGAACGCATTTGTCAAGGACAATAACTTGAAAGTTGGTGATGTTTGCATCTTTGAACTCGTTCATGGAACTAAACTAACCTTCCTGGTTCACATCTTCAGAGAGACAGATAGTTCAAATTGTTCAACGTCTCAAGAATCTGGTCAAATGAGAGCAGCTTGTCAAAGTCAGAGAAAAGAATTGAAAACCATCACTGCTACCAAATAA 1035 0.3884 MAATFPQQLLVKPIHFFKIITAHNVHEGKLMIPNKFVKKYGKRLQNTLFLKTPNGAEWKMILKKRDGKIWFQKGWKEFAEYHSLAHGHLLVFRWDVTSHFQVHIFDLSALEIEYPTEIIKGKTASNRKGNESPGDEHLECHRSGQKRKVNSVEFLQQCQMRSRKCVKVENTMILPRQALHHTATKCKGKSKAMDNQVTALDRASSFKSCNPFFLTVMHRTHISSHGSLNLPMKFCRSHLDLHKKRRLISLQVLSGRIWPAKYQIHKQKTAIRFKLSWNAFVKDNNLKVGDVCIFELVHGTKLTFLVHIFRETDSSNCSTSQESGQMRAACQSQRKELKTITATK* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1223 344 SUPERFAMILY DNA-binding pseudobarrel domain 208 312 IPR015300 -
Gso18g1223 344 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 311 - -
Gso18g1223 344 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Gso18g1223 344 ProSiteProfiles B3 DNA-binding domain profile. 213 312 IPR003340 GO:0003677
Gso18g1223 344 SUPERFAMILY DNA-binding pseudobarrel domain 13 115 IPR015300 -
Gso18g1223 344 Gene3D - 192 314 IPR015300 -
Gso18g1223 344 MobiDBLite consensus disorder prediction 129 144 - -
Gso18g1223 344 MobiDBLite consensus disorder prediction 123 144 - -
Gso18g1223 344 Gene3D - 11 109 IPR015300 -
Gso18g1223 344 SMART B3_2 16 108 IPR003340 GO:0003677
Gso18g1223 344 SMART B3_2 213 312 IPR003340 GO:0003677
Gso18g1223 344 CDD B3_DNA 15 106 IPR003340 GO:0003677
Gso18g1223 344 CDD B3_DNA 211 310 IPR003340 GO:0003677
Gso18g1223 344 Pfam B3 DNA binding domain 213 311 IPR003340 GO:0003677
Gso18g1223 344 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Gso18g1223 344 PANTHER B3 DOMAIN-CONTAINING 10 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1223 Gso-Chr18 26872294 26874901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1223 13 330 B3 DNA Binding Superfamily AT3G18990 27.500 2.54e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso18g1223 B3 1.5e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1223 - - gmx:100819782 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1223 18 26872294 26874901 Gso16g0585 16 7212532 7220296 GST