Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1214 ATGGAGAGAATAGAGAGGAGGAGCAAGAGGGAGGAAATGAAAGAGAAGAAATGGAGCCGAAAGATTGAGTTAACGTTGATGACGATGGGTGGCCAGAACCAGAAGAAAGAGGTGGTTGCCTGTGACGACGACGTATTGGCATCGCCGAGGGATGTGTTTGGGGTTCCTATTTCGGGGACGGATTCAGACAGCACGGGGAGCAGCAACTACGGCGGTGGGCCGGGGTCGCCGGGCCTGGGCCAGAACCAGGCAGCCCAGGCTCAGAGCCAGCAGTGGAGGGCGATGATTGATGTTTTGAGGTTCAAGTCCGTTAGGAGATTCTCGACGATCCCGTTGCTCGCAGCGAGCTACGAGATCTCGAGGAAGAGCCTGAGGAACAAGTTGGCGCGTATTCGGCCTGCGAATGAAGACGATGACTTCGATGGCGGTATTAACATTGATGGCATTTCCACTAAGCCTTCTTGGAGGAACTTCAGTTACGCTGACCTTGCCGTTGCCACGGACGATTTCAGCCCTGAGAACTTGCTTGGAAAAGGTGGTCATGCTGAAGTCTACAAAGGATACTTAGCAGATGGTCAAGTTGTAGCAGTAAAGAGGATAATGAGGAATGAAAAAGAAGCCGAGGACAGAGCTGGTGATTTCTTGACAGAACTTGGAATCATTGCTCACATTAACCACCCCAATGCAACACGCTTGATTGGGTTTGGGATCGACAATGGTCTCTACTTTGTTCTACAATTGGCCCCACATGGCAGCCTTTCCTCTTTGCTCTTTGGTTCTGAATGTTTGGAGTGGAAGATAAGGTTTAAAGTAGCTGTTGGGGTTGCAAAAGGATTGCAGTATCTCCACCACGATTGCCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATTTTACTCAACGAAAATAATGAAGCTGAGATTTCAGATTTTGGTTTGGCAAAGTGGCTCGCAGATAAGTGCGACCACCATGTTGTGTTCCCAATAGAAGGCACATTCGGGTATTTGGCTCCAGAGTACTTTATGCATGGAATTGTTGACGAGAAGACTGATGTTTTTGCATTTGGGGTTTTGTTACTGGAACTCATAACAGGTCGTCGTGCAGTTGATTCAAATAGTAGGGAAAGTCTTGTGAAATGGGCCAAACCACTGCTGGATGCAAAGTTGATCGAAGAAATAGTAGACCCCAGATTAGAAGATAAATATGATCTCGCAGAAATGAAGTGTGTCATGGCAACGGCTTCCTTGTGTATCCATCACATGTCCTCTAAGCGGCCATACATGAATCAGGTTGTGCAGCTACTAAAAGGGGAAAAGGTGCCTAATGAACTCAATCAAAATTCATCAGCTCCAAGATCACTCTTGATAGATGCATGTGACCTAGAAGATTATACTTGCTCTAATTATTTGAACGACCTCAATCGGCACAAGCAATTACTCATGGAGTGA 1455 0.468 MERIERRSKREEMKEKKWSRKIELTLMTMGGQNQKKEVVACDDDVLASPRDVFGVPISGTDSDSTGSSNYGGGPGSPGLGQNQAAQAQSQQWRAMIDVLRFKSVRRFSTIPLLAASYEISRKSLRNKLARIRPANEDDDFDGGINIDGISTKPSWRNFSYADLAVATDDFSPENLLGKGGHAEVYKGYLADGQVVAVKRIMRNEKEAEDRAGDFLTELGIIAHINHPNATRLIGFGIDNGLYFVLQLAPHGSLSSLLFGSECLEWKIRFKVAVGVAKGLQYLHHDCPRRIIHRDIKASNILLNENNEAEISDFGLAKWLADKCDHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVKWAKPLLDAKLIEEIVDPRLEDKYDLAEMKCVMATASLCIHHMSSKRPYMNQVVQLLKGEKVPNELNQNSSAPRSLLIDACDLEDYTCSNYLNDLNRHKQLLME* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1214 484 Pfam Protein kinase domain 173 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1214 484 MobiDBLite consensus disorder prediction 58 87 - -
Gso18g1214 484 ProSiteProfiles Protein kinase domain profile. 170 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1214 484 Gene3D Phosphorylase Kinase; domain 1 145 245 - -
Gso18g1214 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Gso18g1214 484 Gene3D Transferase(Phosphotransferase) domain 1 249 456 - -
Gso18g1214 484 SUPERFAMILY Protein kinase-like (PK-like) 153 446 IPR011009 -
Gso18g1214 484 MobiDBLite consensus disorder prediction 52 87 - -
Gso18g1214 484 SMART serkin_6 170 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1214 484 CDD STKc_IRAK 176 439 - -
Gso18g1214 484 PANTHER OS08G0249100 PROTEIN 1 484 - -
Gso18g1214 484 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 1 484 - -
Gso18g1214 484 ProSitePatterns Protein kinases ATP-binding region signature. 176 198 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1214 Gso-Chr18 25128966 25135051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1214 158 433 Trihelix Transcription Factor Family AT1G68690 44.932 1.62e-69 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso18g1214 Pkinase 1.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1214 - - gmx:100794225 895.575