Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1213 ATGGCTGGTGCCACCAAAAATTGGCTTACGTTTTCGTTGACTCCCATGGAAACGCAGTTCGGTCCATACGACATCACCACTCCCTCTCACTGCTTCAACGACAACAACTTTTATGGGTGGGCGAATTCAAAGGGTGTGATGGATTCACAGAGTGAGACCCAACAACTTGCGGTGCCGAAAATGGAAGATTTTTACTTCGGTGATCACCAGCAAGATCTGAAGGCGATTGTTCCTGGGTTCAAAGCGCTCTCTGGGACCAACTCGGTGGATGACTCGGCCCCCAACAAGACGACGACTCGGGTTGCGCCCGCTGAGTTGACTGGTGCTCACTCAGGCGAGTCTTGCAAAGGATCTGCTTTGTCGTTATGCGATGTTGCTGCAAATGGTTCTGATGATAGTAATGATAATAAGGCCATTGTTGCGGTGGGGTTTGATACTCGGAAGAAGGTTGCTCATACCTTTGGCCAGCGAACTTCAATTTACAGAGGGGTCACAAGGCACCGATGGACGGGCAGATATGAAGCGCATCTATGGGATAACAGCTGTAGGCGAGAGGGTCAGGCCAGGAAAGGGCGTCAAGTGTACTTGGGTGGTTATGACAAGGAAGATAAGGCTGCGAGGGCTTATGATTTAGCAGCTCTAAAGTACTGGGGACCAACAGCAACCACTAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAGCATGTAGGAAAGCAAGAATTTATTGCATCACTGCGAAGGAAAAGCAGTGGTTTTTCGAGGGGAGCTTCTGCTTACAGGGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCGAGAATTGGCCGGGTTGCGGGAAACAAGGATCTATATTTGGGAACATTTTCAACTGAAGAGGAGGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGTGCCGTAACCAATTTCGAGATGAGGCGATATGACATCGACGCTATATTGAACAACTCTCTTCCAGTTGGCGGCATAGCAAAACGCTTTAAAGTTTCCCCAGAAACGGAGAACAAAGCTCTTGTCAGCACCATTCAACCACCTCAGAACACAAACGCCAGTAGCAGCATCAATTTCTCAACCATTCAGCCAGTGTCTTCTATACCCTATGATTCTGCAATCACATGTTACCCCCACAACCTCTTCCACCATTTTAATCCCACCAACGGTGAAAGTAGCACTGCAGAATTTGCTGCAACTATGACCGATGCAATCGCACTCGCTACCCTTCCACCACTGGCAGTTCCTGGGTTCTTCGTATGGCCTCATCAGAACTATTGA 1320 0.4818 MAGATKNWLTFSLTPMETQFGPYDITTPSHCFNDNNFYGWANSKGVMDSQSETQQLAVPKMEDFYFGDHQQDLKAIVPGFKALSGTNSVDDSAPNKTTTRVAPAELTGAHSGESCKGSALSLCDVAANGSDDSNDNKAIVAVGFDTRKKVAHTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDKAARAYDLAALKYWGPTATTNFPISNYTKELEEMKHVGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGASAVTNFEMRRYDIDAILNNSLPVGGIAKRFKVSPETENKALVSTIQPPQNTNASSSINFSTIQPVSSIPYDSAITCYPHNLFHHFNPTNGESSTAEFAATMTDAIALATLPPLAVPGFFVWPHQNY* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1213 439 Pfam AP2 domain 160 218 IPR001471 GO:0003700|GO:0006355
Gso18g1213 439 Pfam AP2 domain 262 312 IPR001471 GO:0003700|GO:0006355
Gso18g1213 439 ProSiteProfiles AP2/ERF domain profile. 262 320 IPR001471 GO:0003700|GO:0006355
Gso18g1213 439 SMART rav1_2 160 232 IPR001471 GO:0003700|GO:0006355
Gso18g1213 439 SMART rav1_2 262 326 IPR001471 GO:0003700|GO:0006355
Gso18g1213 439 Gene3D AP2/ERF domain 262 322 IPR036955 GO:0003700|GO:0006355
Gso18g1213 439 Gene3D AP2/ERF domain 160 228 IPR036955 GO:0003700|GO:0006355
Gso18g1213 439 ProSiteProfiles AP2/ERF domain profile. 160 226 IPR001471 GO:0003700|GO:0006355
Gso18g1213 439 CDD AP2 261 320 IPR001471 GO:0003700|GO:0006355
Gso18g1213 439 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 89 435 - -
Gso18g1213 439 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Gso18g1213 439 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Gso18g1213 439 SUPERFAMILY DNA-binding domain 159 228 IPR016177 GO:0003677
Gso18g1213 439 CDD AP2 159 228 IPR001471 GO:0003700|GO:0006355
Gso18g1213 439 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 89 435 - -
Gso18g1213 439 SUPERFAMILY DNA-binding domain 261 321 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1213 Gso-Chr18 25105772 25112933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1213 5 344 AP2-EREBP Transcription Factor Family AT1G51190 54.881 2.61e-125 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso18g1213 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1213 K09285 - gmx:100795280 892.108