Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1211 ATGGATGCAACCGAGACAGAAAAAATCTACGTTGCAGTTGGCTATGATATTGTAGATGGATTTCAAACTTTGAGTTGGGCGATGAAGAAATGGAATTCCCATCCTTGCTCTATTGTCATTCTTCATGTGAATTACAACACTTCCAAGAAATATGTTCCCACACTCCTCGGAAAACTCCCTGCAAAAGGCGCGTCTGAAAAGATACTGGAACGTATCCGGAAACATGAGCAAAGGATAATCCAGAAGCTCCTTTCCAAGTATATAGCTTTATGTGACAATGTGCCAGCTGAAACACTTGAAGTTGAGAAATTTGATGAGCCAATGGAAAAGCGCACTATAGACTTGATCCATGGTCTAGGAATAACGAAATTGATCATGGGATTTTCATTCATGAAGCCTTCCTTGAAATCGGAAGTTGACGTTAACGGATTGTTCTACGTTAATCAGCACAAGCCACCCTTTTGTGAGTTGTTCGTTATCTTTGGAGGGAAACAAGTTACACCTCGAGTGAAGAATGACGAGATAATCATGGAGGATGATAATGGGTTCAAGATTGCCAGCATGAGAGATAAGATAAATTGTATAGATTGGCTAGAGAGAATGTTCTTTGATAAAACCATTGACACCCAACATAGAAGTTCTTGCGCACCATCATCATCTTCAACAAATTTCGAGCCGTATCTTAACCAAAACGAATGGAAATTTAGTTTCCAAGAAATTGAAAATTATGCGCAGGAGTTAATGTCTTTAAATTTGGAGGAAGGAAGTTCTGGCCAAGACAACCATGTTTCCCACTTTAACCCAATTGAGCCATATGTCAAAGAACGTAACAGTTCGAATAACATGAGTGCCGCAGAAAATATTGACATACTCAAAGATAAAGTGAATGAAGCTTACAGAACCATCCAATTAAAAAGGAAAGAAGACGAGGCCAATTGGGAGAGACATGAAAAAGCTGAATGGGCTATTTATTTGTGTAACCGTCGGGAAGAAGAACTTGAATATCTAATAAAGGAAGAAGTGACAAGAAAGGAAGAACTGAGGAAGGATCTGGATGCAGAAAAAGAACAATTTCACAAAATTAAAATGGATATTGAGGATAGCAAGAAAAAGCTTAGTTTAGTGGCAGAGCAACAATCAGAGCTCCTAAACAGGCTTCATATTTACACATTGGCAGTGCCACAAGCTGAAACCAAACTAGGGAAGGCATTGGCTGAAAAGACAGAGATGCTTATGGAGATGGATGGTCTAAGGAAACAAAGGAATGCAATGAATAGAAGCATTGAATTTTTTCAGAGAAAAAGATGCCACAAGAATGAGTGTAGGCTGATAGAAAAGGGTTGTGGTTTGAGGGAGTACACAAAGGAGGAGATCACCTTAGCCACCCAAAACTTTTCAGAGCAAATGAGGTTGAAATCGGATGGGAATTGGACCAATGTGTACAGAGGACAAATTAATCATTCCACTGTTGCAATCAAGATGCTCAATCATGTTCCTGACTTGTCCCAACTAGATTTCCAAGCCAAGGTGAGGAATCTTGGTAAAATTCGGCAACCTCATCTGGTTGCTATGTTGGGCTTTTGCTCTGAGCCCAAATGCTTAGTATTGGAATACATGAACAATGGCAGCTTGGAAGAAATGCTATTTTGCAAGAGCAAAAACCGGGTCTTAAGTTGGCGTGATTGCATAAGGATAGCCATAGAAGTTTGCTCAGGGTTGGGCTTTCTAAATGCAGCTCAGCCCAAGCCCATTGTTCATTGTCATCCTTCTCCATCCAAAATCCTCCTAGATTGCAATCTTGTTGCAAAAATAACAGGTTTTGGGCTTCATGGGTGCAGTGAAGAGTGTAATGATAATTCATCAGATATGAAGGCAATAGGGGTTTTATTGCAAAATCTATTGAATGGAAGAAGAAATTTGGTGACAATGGATACAGAGGCTTGTTTTGATGAGATTGGTGAGCAATGGCCATTTGATGTGGCAAGAGATGTTATGGGCTTAGCTATGCGGTGCATGTCCATGAATTGTGAGCCCAATGGAGAAATGAGCATAACAAGAGTCGTGGAGGAGCTCAATGAGATCAGAAAAAAGGGTGATGACATGGTTGCTAGGGAAGGATGGAGGAATATAAATGGGGGAAACGTACATGGACAAGATTCTACCCATGTGCCTAGTGTTTTCATTTGCCCTATCCTTCAGAGAATAATGAAAAATCCACATATAGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAAGAGTGGTTGCAATCGGGGCATGACATATCACCCAAAAACCTGAAGCTGAAGCACAAATTACTTACCCCTAATCATACCCTCCGTTCCCTAATTGAGGACTGGCAAGGCAAGAGATCAGCTAAAGTTGCAAATTAA 2397 0.4038 MDATETEKIYVAVGYDIVDGFQTLSWAMKKWNSHPCSIVILHVNYNTSKKYVPTLLGKLPAKGASEKILERIRKHEQRIIQKLLSKYIALCDNVPAETLEVEKFDEPMEKRTIDLIHGLGITKLIMGFSFMKPSLKSEVDVNGLFYVNQHKPPFCELFVIFGGKQVTPRVKNDEIIMEDDNGFKIASMRDKINCIDWLERMFFDKTIDTQHRSSCAPSSSSTNFEPYLNQNEWKFSFQEIENYAQELMSLNLEEGSSGQDNHVSHFNPIEPYVKERNSSNNMSAAENIDILKDKVNEAYRTIQLKRKEDEANWERHEKAEWAIYLCNRREEELEYLIKEEVTRKEELRKDLDAEKEQFHKIKMDIEDSKKKLSLVAEQQSELLNRLHIYTLAVPQAETKLGKALAEKTEMLMEMDGLRKQRNAMNRSIEFFQRKRCHKNECRLIEKGCGLREYTKEEITLATQNFSEQMRLKSDGNWTNVYRGQINHSTVAIKMLNHVPDLSQLDFQAKVRNLGKIRQPHLVAMLGFCSEPKCLVLEYMNNGSLEEMLFCKSKNRVLSWRDCIRIAIEVCSGLGFLNAAQPKPIVHCHPSPSKILLDCNLVAKITGFGLHGCSEECNDNSSDMKAIGVLLQNLLNGRRNLVTMDTEACFDEIGEQWPFDVARDVMGLAMRCMSMNCEPNGEMSITRVVEELNEIRKKGDDMVAREGWRNINGGNVHGQDSTHVPSVFICPILQRIMKNPHIAADGFSYELEAIEEWLQSGHDISPKNLKLKHKLLTPNHTLRSLIEDWQGKRSAKVAN* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1211 798 SUPERFAMILY RING/U-box 719 794 - -
Gso18g1211 798 Gene3D Transferase(Phosphotransferase) domain 1 539 624 - -
Gso18g1211 798 PANTHER OS02G0152300 PROTEIN 4 793 - -
Gso18g1211 798 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 797 IPR013083 -
Gso18g1211 798 Pfam U-box domain 723 791 IPR003613 GO:0004842|GO:0016567
Gso18g1211 798 SUPERFAMILY Protein kinase-like (PK-like) 450 676 IPR011009 -
Gso18g1211 798 Coils Coil 414 434 - -
Gso18g1211 798 ProSiteProfiles Protein kinase domain profile. 466 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1211 798 PANTHER U-BOX KINASE FAMILY PROTEIN 4 793 - -
Gso18g1211 798 Gene3D Phosphorylase Kinase; domain 1 449 538 - -
Gso18g1211 798 Coils Coil 330 364 - -
Gso18g1211 798 Pfam Protein tyrosine and serine/threonine kinase 474 613 IPR001245 GO:0004672|GO:0006468
Gso18g1211 798 Coils Coil 288 308 - -
Gso18g1211 798 CDD RING-Ubox_WDSUB1_like 727 765 - -
Gso18g1211 798 ProSiteProfiles U-box domain profile. 722 795 IPR003613 GO:0004842|GO:0016567
Gso18g1211 798 SMART Ubox_2 726 788 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1211 Gso-Chr18 25020902 25028862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1211 3 798 U-box Gene Family AT5G65500 43.260 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso18g1211 PK_Tyr_Ser-Thr 2.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1211 - - gmx:100795815 1613.2