Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1187 ATGGAATTTCAGGAGCATCATGTGGAAGCTGAACTTGGGATGCCCGCAGCAGCAGCGAGCTATGAGGAGTTCGGAATGCCACCAAATCACGGCCAAGAGGAGCCAGTGGTGGCGGCGGTGCCGGTACCACCACCCGCCAACACCATGGCCCGCAACAGCGGCAAGGGAAAGTACCAGGAGTGCCTCAAGAACCACGCAGTTGGAATCGGCGGCCACGCCCTCGACGGCTGCGCCGAGTTCCTGCCGGCGGGCGAGGAGGGAACCCTGGACGCGCTAAAGTGCGCCGCGTGCAACTGCCACAGAAACTTCCACCGCAAGGAGACCCCGGACGGCACCTACTTGCTGCCCTTCCACCACCGCCACCAGCCACCGCCGCCGCCGTTCGCGCCGTACTACCGTGCGCCGGCTGGCTACCTGCACATGACGGGACCGCAGCACGCCACGCTGGCGCTTCCCTCCACGTCAGGAGGGGGTGGGACCCAGTCCCCTAGGGAGGACCAGGGAGACCTGTCGGACCCACCAACGAGTGGTGCCACCACTCACGGTGGGTCCAGCAGCAAGAAGCGTTTCAGGACAAAATTCACCCAGCAGCAGAAGGACAAGATGCTGGCCTTCGCGGAGAAACTTGGCTGGAGGATTCAAAAGCACGACGAGGGTGTCGTGCAGGAGTTCTGCTCGGAAACCGGCGTTCAGCGTCATGTCCTTAAGGTGTGGATGCATAACAACAAGCACACCTTGGGTAAAAAGCCCTAG 753 0.6242 MEFQEHHVEAELGMPAAAASYEEFGMPPNHGQEEPVVAAVPVPPPANTMARNSGKGKYQECLKNHAVGIGGHALDGCAEFLPAGEEGTLDALKCAACNCHRNFHRKETPDGTYLLPFHHRHQPPPPPFAPYYRAPAGYLHMTGPQHATLALPSTSGGGGTQSPREDQGDLSDPPTSGATTHGGSSSKKRFRTKFTQQQKDKMLAFAEKLGWRIQKHDEGVVQEFCSETGVQRHVLKVWMHNNKHTLGKKP* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1187 250 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 249 - -
Gso18g1187 250 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 187 243 IPR006455 -
Gso18g1187 250 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 45 249 - -
Gso18g1187 250 SUPERFAMILY Homeodomain-like 176 248 IPR009057 -
Gso18g1187 250 Pfam ZF-HD protein dimerisation region 57 108 IPR006456 -
Gso18g1187 250 MobiDBLite consensus disorder prediction 147 191 - -
Gso18g1187 250 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 57 107 IPR006456 -
Gso18g1187 250 MobiDBLite consensus disorder prediction 147 185 - -
Gso18g1187 250 Gene3D - 174 248 - -
Gso18g1187 250 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1187 Gso-Chr18 24016599 24017935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1187 54 246 ZF-HD Transcription Factor Family AT4G24660 54.592 3.63e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso18g1187 ZF-HD_dimer 1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1187 - - gmx:100798992 493.812