Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1180 ATGGAAGAAGCACTCCGTCGTCTCAACGGAATGGCCCCCACTCAAGTCCCCGACACAACCGTCTCCGACCACCACCCCAAGAAGAGCGCCACCAAGCGCGGGCTGCGCGACAACGCCAGCTCCGGCGGCACCATGCGGTACCGCGGCGTGCGCCGCCGCCCCTGGGGCCGGTACGCCGCCGAGATCCGTGACCCGCAGTCGAAGGAGCGGCGCTGGTTGGGCACCTTCGACACGGCGGAGGAGGCCGCCTGCGCCTACGACTACGCCGCCCGCGCCATGCGCGGCGCCAAGGCCCGCACCAATTTCGTCTACCCCGACGCCGCCGACCCCCACCACCACCTCTTCCAACCCTACAATATCAACCCCAAACACTGCCACGTCACCAGGTGGATCCCCAACCAAAATTTAAGCGCTGACTTCTCCACAAATGGCCACAACAACAACAACCCTTCTTCTTCTTCTTCTTCTTCTTCTCTTAACATGCTTCTCTTTCGTGACTTTCTCAACTCTTCTTCTCACCACTTTCATAACAATAATAATAATAGCAAGTCTTCTAGTTGTTATGTAAACTCTTCATCATCATCTTCTTCTGCCACTAACTGTCTCCAAGGTTGTTGCTTTACCAACGCTAATTTTGGAATGGAAGTTGCTGAAGCTATTGATGAAGAATCGGAGTTTTTCCCGCGAGAGTCTTCGGATTCTGGATTGTTGGAGGAGATTGTCCACAAGTTCTTGCCAAAATCGAAGCCCAAGAATGAAACTTTGTCAGCTCCTGAGATGCTTCCTCAACCGAAATTTGATCACAAGAATGTTTCTGCTGCAAAGGGTTATGCTGATATTAGGACGAGGGTTCCGAAGGTTGAAGCTTTTGGTGTCCCTTATGATTCTTCTCCCGTGCAGCAGCAATTCGAAGCCCTTCATCATGGTTTCAACACCATGCAGGGTGTGGCTATGGAGAGAAACAATCAGTTTGTGATGAACCATGTTGCTGCAGGGTGCTCCAACATGGAAGATTTTCTTCAGTATCCAGAGCTTTTTAATTCTCTTGCAGCCAGGATGCAAAACGCTTAG 1071 0.5201 MEEALRRLNGMAPTQVPDTTVSDHHPKKSATKRGLRDNASSGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDYAARAMRGAKARTNFVYPDAADPHHHLFQPYNINPKHCHVTRWIPNQNLSADFSTNGHNNNNPSSSSSSSSLNMLLFRDFLNSSSHHFHNNNNNSKSSSCYVNSSSSSSSATNCLQGCCFTNANFGMEVAEAIDEESEFFPRESSDSGLLEEIVHKFLPKSKPKNETLSAPEMLPQPKFDHKNVSAAKGYADIRTRVPKVEAFGVPYDSSPVQQQFEALHHGFNTMQGVAMERNNQFVMNHVAAGCSNMEDFLQYPELFNSLAARMQNA* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1180 356 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
Gso18g1180 356 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 218 356 - -
Gso18g1180 356 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 207 - -
Gso18g1180 356 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Gso18g1180 356 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Gso18g1180 356 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Gso18g1180 356 MobiDBLite consensus disorder prediction 1 48 - -
Gso18g1180 356 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 207 - -
Gso18g1180 356 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 218 356 - -
Gso18g1180 356 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Gso18g1180 356 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Gso18g1180 356 SUPERFAMILY DNA-binding domain 46 103 IPR016177 GO:0003677
Gso18g1180 356 CDD AP2 46 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1180 Gso-Chr18 23407581 23408676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1180 1 273 AP2-EREBP Transcription Factor Family AT1G24590 38.176 2.04e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso18g1180 AP2 5.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1180 - - gmx:102661952 625.935