Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1173 ATGGGTCGTCGTAAGATTCAAATTGCAGTGGTGAAAGACCCTAATACAAGGCAAGTAACATTTTCCAAGCGTCGAACAGGTTTGTTCAAAAAGGCGAATGAATTGTCCATCTTGTGTGGAGTAGAAATTGCTATCGTTGTGTTCTCTATTGGAAACAAACCTTACTCTTTTGGGCACCCAAGTGTTGATGTTGTTGTGACTAAATTTCTTCAACATGCGACCAATTCAAATGATGCCCTTGGAAGCAACAATTCTTCAAATGAAGTTGTTGGTGACATGGAAAGGCTGAATCAACAATTATCTGATCTTCAGACCCAAATACTCGAGGAGGAAATTAAGGGTACAAAGCATGATGAGAGACTAAAACAACATGAAGTGACACAAGTCTTTCAATATAAAGAATTGCAAGGTTTGTGTTTAGAGCTCCAACGTAAGGTGAAGGACTATGTTGATGAAATTGAGGTGTCGGAGTGTATGTTGCTTCTTGCACAAGAACCTGTAGTAGGAGTAAGAAAACAACCTTGGGTTGCTCTCATCTCTGCTAGATATAGTGAGATGGGAGAGAAAGGAACAATAACGATAGTAGTTCATGTTGCAATTGTTGTAGCACAAGATTAG 618 0.3932 MGRRKIQIAVVKDPNTRQVTFSKRRTGLFKKANELSILCGVEIAIVVFSIGNKPYSFGHPSVDVVVTKFLQHATNSNDALGSNNSSNEVVGDMERLNQQLSDLQTQILEEEIKGTKHDERLKQHEVTQVFQYKELQGLCLELQRKVKDYVDEIEVSECMLLLAQEPVVGVRKQPWVALISARYSEMGEKGTITIVVHVAIVVAQD* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1173 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso18g1173 205 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Gso18g1173 205 Coils Coil 86 113 - -
Gso18g1173 205 PANTHER MADS BOX PROTEIN 2 173 - -
Gso18g1173 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso18g1173 205 Coils Coil 132 152 - -
Gso18g1173 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso18g1173 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso18g1173 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso18g1173 205 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Gso18g1173 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gso18g1173 205 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gso18g1173 205 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1173 Gso-Chr18 23096804 23099082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1173 1 164 Type I MADS-box Gene Family AT2G34440 38.150 6.08e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso18g1173 SRF-TF 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1173 - - gmx:100784161 339.732