Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1164 ATGTTGTTTGGAGCTCCTTCTGCCACCGGCAAGGATCGTAACGGGATGGTGTTTGTGGAACACCTCATTCTCAAACTCAGCAACCCCGATCTCCGAGAAAACGCTCTCCATGAACTCTCTAAGGATCTTGCTCCATTATTGTGGAATTCTTTTGGTACCATGGCAGCACTTTTACAGGAAATAGTTTCAATATTCCCTGTTATTTCACCTCGAAATCTTACTCCAGCACAATTAACTCGAGTGTGCAATGCTCTTGCTCTTTTTCAGTGGAATAGAATGGTGCTAAGGTTCCGTTGTTGCTCCAATACGGTTCTATTGTGGCTAGGTGGCAGCAGATGCGTTGCGGAATTTCATGTGATTGAAATTCACACTGCAATTGCGGACTATTGCGGTTGCGGACAACACTCAACAGCAATATTTCGGCTGCAATTTAGAACCATGGTCCAGTCACATATACTTTGTCAGGTCTTTTTCTCCTTTTTCCTCTGCTGCATAGTAGTCACTGAAGACATAGAAGAACAAAGTGAAGTAAACTCAGGATTTTTCTACTCAAGTGCGGAACAGAGAGAAGCTATGGTTGCAGCTGAAAGACGGCAGGTTGATGAAAAAGTCACAAGAATCATTGAACTGAAGAATAAGGTTTGTTCCGGTAATGATAGCAATTTTGTTGTCATCAACCAAAAAGGAATTGATCCCCCATCTCTGGACCTGCTTGCAAGGGAAGGAGAGAGGTGA 735 0.434 MLFGAPSATGKDRNGMVFVEHLILKLSNPDLRENALHELSKDLAPLLWNSFGTMAALLQEIVSIFPVISPRNLTPAQLTRVCNALALFQWNRMVLRFRCCSNTVLLWLGGSRCVAEFHVIEIHTAIADYCGCGQHSTAIFRLQFRTMVQSHILCQVFFSFFLCCIVVTEDIEEQSEVNSGFFYSSAEQREAMVAAERRQVDEKVTRIIELKNKVCSGNDSNFVVINQKGIDPPSLDLLAREGER* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1164 244 Pfam TCP-1/cpn60 chaperonin family 173 242 IPR002423 GO:0005524
Gso18g1164 244 Pfam Cell differentiation family, Rcd1-like 22 89 - -
Gso18g1164 244 SUPERFAMILY GroEL apical domain-like 174 242 IPR027409 -
Gso18g1164 244 Gene3D GroEL 163 243 IPR027409 -
Gso18g1164 244 PANTHER CHAPERONIN 162 242 IPR017998 GO:0140662
Gso18g1164 244 Gene3D - 11 118 IPR011989 -
Gso18g1164 244 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT ZETA 2 162 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1164 Gso-Chr18 22436631 22442299 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Gso18g1164 Cpn60_TCP1 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1164 K09498 - gmx:102664939 493.041