Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1153 ATGGAGAAAACAATCCATCTTGTATATTTCAAATGCCTTGTTTTCCTTCTCATGAAGCAAGTAATAGTGATGGCAGAACCTAGAGCCAGGACTGTCAATATAACATGTAACAATAAGCTAGAGCACAACACCACCATCTTTGTTCCAAATTTTGTTGCAACCATGGAGAAGATCAGTGAACAGATGCGCAATACCGGTTATGGAACAGCAGTTGTAGGTACAGGAGGACCTGACACCAACTACGGGTTGGCTCAGTGCTATGGTGATCTCTCATTACTTGACTGTGTTTTATGTTATGCCGAGGCACGCACGGTTCTTCCCCAATGCTTCCCTTACAATGGCGGTCGCATATACCTTGATGGTTGCTTCATGAGGGCCGAAAACTATAGCTTCTATGATGAGTACATAGGGCCAGGAGACAAGGCTGTTTGTGGAAACACGACAAGGAAGAGCACAAGTTTTCAAGCAGCAGCAAAGAAGGCTGTTTTGAGCGCTGTTCAAGCTGCAGCAAACAATAAAGGGTATGCTAGGAAGGAGGTTTTTGTGGCAGGAACAACAAATGATGCAGCTTATGTTCTGGCTAATTGTTGGAGGAGCTTGGACACAAGGTCTTGTAGAGCTTGTCTTGAGAATGCATCTTCTTCGATATTGGGGTGCTTGCCCTGGTCAGAAGGGAGAGCATTGAACACTGGATGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAACAGGAAAATGGAAGTTCAGGAGGTAATGTACTGGTGATAGTGGTTGCAGTAGTCAGTTCAGTGATTGTTTTGGTGGTTGGAATAGCTATTGTGGTTTATATCCGCAAACACAGATATATTCAAATGAAACGAAGAGGTTCAAATGATGCAGAAAAGTTAGCCAAGAGCCTTCACCACAATAGCTTGAACTTCAAGTATTCTACACTGGAGAAGGCTACTAATTCCTTTGATGAAGCTAATAAGCTTGGACAAGGAGGATTTGGAACCGTTTATAAAGGAGTTCTGGCTGATGGAAGAGAGATTGCTATTAAGAGATTATATTTCAACAACCGACATAGAGCAGCAGATTTCTTCAACGAAGTCAACATAATTAGCAGTGTGGAACACAAAAATCTAGTCAGACTCTTAGGATGCAGTTGTTCAGGACCTGAAAGCCTTCTTATATATGAATATCTACCTAACAGAAGTCTAGATCGCTTCATATTTGATAAAAACAAGGGTAGAGAACTAAACTGGGACAAGAGATATGACATTATCATCGGAACAGCTGAAGGATTGGTTTACCTGCATGAAAACTCCAACATTAGGATAATCCACAGAGATATAAAAGCCAGCAACATCTTATTGGATGCAAAGCTTCGTGCTAAAATTGCTGATTTTGGTTTGGCCAGGTCCTTTCAAGAAGATAAGAGCCACATTAGTACAGCTATCGCTGGAACTTTGGGTTATATGGCTCCAGAGTACCTAGCACACGGTCAGTTAACAGAAAAAGCTGACGTATATAGTTTTGGAGTGTTACTGCTAGAAATAATTACTGGAAGACTGAACAATAGAAGCAAAGCATCAGAATATTCGGACAGTCTAGTTACAATGACATGGAAGCATTTTCAGTCAGGGACTGCGGAACAATTAATCGATCCATGTCTAGTGGTGAATGACAACCATAGAAGCAATGTTAAGAATGAGATTTTGAGAGTGTTGCACATAGGACTTCTATGCACCCAAGAAATCCCTTCCTTAAGACCATCTATGTCAAAGGCACTAAAGATGCTAACAAAGAAGGAGGAGCACTTGGATTTGGAAGCTCCTTCCAATCCACCCTTCATAGATGAAAGTACCATGGAACTCCATGACCAAAATGATGACCCATTTTACCCTCTCAATGCAGAAGATTCATTGGCTACTATGTCTCATAGCTCATTTTATGCCAGGTAA 1950 0.4138 MEKTIHLVYFKCLVFLLMKQVIVMAEPRARTVNITCNNKLEHNTTIFVPNFVATMEKISEQMRNTGYGTAVVGTGGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNGGRIYLDGCFMRAENYSFYDEYIGPGDKAVCGNTTRKSTSFQAAAKKAVLSAVQAAANNKGYARKEVFVAGTTNDAAYVLANCWRSLDTRSCRACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEQENGSSGGNVLVIVVAVVSSVIVLVVGIAIVVYIRKHRYIQMKRRGSNDAEKLAKSLHHNSLNFKYSTLEKATNSFDEANKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFFNEVNIISSVEHKNLVRLLGCSCSGPESLLIYEYLPNRSLDRFIFDKNKGRELNWDKRYDIIIGTAEGLVYLHENSNIRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIITGRLNNRSKASEYSDSLVTMTWKHFQSGTAEQLIDPCLVVNDNHRSNVKNEILRVLHIGLLCTQEIPSLRPSMSKALKMLTKKEEHLDLEAPSNPPFIDESTMELHDQNDDPFYPLNAEDSLATMSHSSFYAR* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1153 649 Gene3D Phosphorylase Kinase; domain 1 282 396 - -
Gso18g1153 649 Gene3D - 28 131 IPR038408 -
Gso18g1153 649 Gene3D - 141 241 IPR038408 -
Gso18g1153 649 Pfam Protein kinase domain 322 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1153 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Gso18g1153 649 ProSiteProfiles Gnk2-homologous domain profile. 29 131 IPR002902 -
Gso18g1153 649 Pfam Salt stress response/antifungal 43 129 IPR002902 -
Gso18g1153 649 Pfam Salt stress response/antifungal 144 238 IPR002902 -
Gso18g1153 649 SMART serkin_6 321 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1153 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 3 630 - -
Gso18g1153 649 SUPERFAMILY Protein kinase-like (PK-like) 304 625 IPR011009 -
Gso18g1153 649 CDD STKc_IRAK 327 598 - -
Gso18g1153 649 Gene3D Transferase(Phosphotransferase) domain 1 397 610 - -
Gso18g1153 649 ProSiteProfiles Protein kinase domain profile. 321 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1153 649 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Gso18g1153 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 3 630 - -
Gso18g1153 649 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1153 Gso-Chr18 21875949 21880668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1153 2 649 Receptor kinase-like Gene Family AT1G70520 67.075 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso18g1153 Pkinase 7.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1153 - - gmx:100818343 1268.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0250 1 2946366 2951640 Gso18g1153 18 21875949 21880668 PCT
Gso18g1153 18 21875949 21880668 Gso1g0485 1 7298164 7300363 PCT
Gso18g1153 18 21875949 21880668 Gso2g0961 2 11133839 11137063 PCT