Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1151 ATGGAAGACGAAATATACGGCGTGTCATCCACGGCGGAGTACACGGACAGGGCGCTGATGACGCCGGAGAACATATTTCCGGCGGAGTACCACAGCTTCCTAATGTCCTCCGCCGCCCGGACTCCAATGTTCGGATCCGACGAGTTTCTCTCCGCCGCCATCGCCGTCACCGCCGGCAACGAAACCGAACCCTACCCTAACGTCTCCGTCGCACCAGAAATTCAGCGCCACCACGACGCCTCTTCTCTCATCAAAGCCAAAATCGCCTCTCACCCTCACTACCCTCGTCTCCTCCAAGCCTACATCGAATGTCAGAAGGTTGGAGCGCCTCCAGAACTCACGTGTTTGTTAGAGGAAATCCGACGAGAAAACGACGTTCGCCAGAGGGACGTTGTTGTTTCCACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCTGATCTGACGCGGCCTTTTGACGAAGCCACCACCTTCCTCAACAAGATCGAAACTCAGCTTACCGATCTCTGCAGCCGTTCTTCTCTTCCAACTCTTTACGATGATGGGGGTGTGTCTTCAGAAGAAGGTTTTAGTGCTGGAGATGGTGATCCCCAAGATGGCCAATTACGGAGTGAAGATCGAGAGCTGAAGGATAGGCTTTTACGTAGGTTTGGAAGTCACGTTGGATCTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAGGGGTAAGCTGCCGAAAGACGCTAGGCAAACACTACTTCAGTGGTGGAATATTCACTACAAATGGCCTTACCCTACGGAAGGTGATAAGATTGCACTGGCTAAATCAACTGGATTAGACCAGAAGCAAATTAACAACTGGTTTATTAATCAGAGAAAGCGCTACTGGAAACCATCTGAGAACATGCCGTTCTCTATGGTGGATGGTCTGACCGGTCGGTTCCTTACTGATGAATGA 975 0.5036 MEDEIYGVSSTAEYTDRALMTPENIFPAEYHSFLMSSAARTPMFGSDEFLSAAIAVTAGNETEPYPNVSVAPEIQRHHDASSLIKAKIASHPHYPRLLQAYIECQKVGAPPELTCLLEEIRRENDVRQRDVVVSTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLTDLCSRSSLPTLYDDGGVSSEEGFSAGDGDPQDGQLRSEDRELKDRLLRRFGSHVGSLKLEFSKKKKRGKLPKDARQTLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRYWKPSENMPFSMVDGLTGRFLTDE* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1151 324 Pfam Homeobox KN domain 261 300 IPR008422 GO:0003677|GO:0006355
Gso18g1151 324 SMART KNOX2_2 133 184 IPR005541 GO:0003677|GO:0005634
Gso18g1151 324 SUPERFAMILY Homeodomain-like 242 315 IPR009057 -
Gso18g1151 324 Gene3D - 240 310 - -
Gso18g1151 324 Pfam KNOX2 domain 136 183 IPR005541 GO:0003677|GO:0005634
Gso18g1151 324 SMART HOX_1 243 308 IPR001356 GO:0003677
Gso18g1151 324 CDD homeodomain 253 305 IPR001356 GO:0003677
Gso18g1151 324 ProSiteProfiles 'Homeobox' domain profile. 241 304 IPR001356 GO:0003677
Gso18g1151 324 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 33 323 - -
Gso18g1151 324 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
Gso18g1151 324 SMART ELK_2 221 242 IPR005539 GO:0003677
Gso18g1151 324 ProSiteProfiles ELK domain profile. 221 241 IPR005539 GO:0003677
Gso18g1151 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 33 323 - -
Gso18g1151 324 Pfam KNOX1 domain 84 125 IPR005540 GO:0003677|GO:0005634
Gso18g1151 324 Pfam ELK domain 221 242 IPR005539 GO:0003677
Gso18g1151 324 ProSitePatterns 'Homeobox' domain signature. 279 302 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1151 Gso-Chr18 21859296 21871901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1151 3 324 Homeobox Transcription Factor Family AT1G23380 62.275 2.01e-142 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso18g1151 KNOX2 6.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1151 - - gmx:100786454 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0253 1 2965853 2974595 Gso18g1151 18 21859296 21871901 PCT
Gso18g1151 18 21859296 21871901 Gso1g0253 1 2965853 2974595 PCT