Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1143 ATGTCAACACTGAACCACCTCTTTGATCTTCCAGAACAGATATGCTACGTACAATGTGGATTCTGTACAACAATACTAATGGTGAGCGTTCCATGCAGCATTTTGTCAACAGTGGTGACCGTGAGATGCGGCCACTGCACAAGCCTCCTCTCTGTCAACATGAAGAAAGCTTCCTTGGTCCCTTTCCACCTTCTAGCTTCCCTTACTCATCTTGAGCCAAAAGAAGGTGCTTCAGAAGATGGTGCAAACAAGAGTTTGAGCAGCTATAATACATCCACAATGACCAATTCGGATTGTGAAGAAGAGAACGTGACCCAAATTTCCGATTTCGTGCATAAACCTCCAGAGAAGAGACAAAGAACACCATCTGCTTATAACCGTTTCATCAAAGAAGAGATTAAAAGGCTTAAGGCTGAAAACCCTAACATGGCCCACAAGGAGGCTTTCAGCACTGCGGCAAAAAATTGGGCCAATTTCCCTCCGTCACCGAGTGATGGAGAAGCAGACAGCTGTAACGGGACAGAGCAACTTGTGGATCTGGACTCCCATCAAGAGCCTCGTGATGCAATTGAGGTTGATAAAGAAGGCCAAGGTTTCCGTGGAAGAAAGGCTCCAAGGAATTCTATCTGGGAAAGGACACCTTTTGAGTGA 651 0.4578 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSILSTVVTVRCGHCTSLLSVNMKKASLVPFHLLASLTHLEPKEGASEDGANKSLSSYNTSTMTNSDCEEENVTQISDFVHKPPEKRQRTPSAYNRFIKEEIKRLKAENPNMAHKEAFSTAAKNWANFPPSPSDGEADSCNGTEQLVDLDSHQEPRDAIEVDKEGQGFRGRKAPRNSIWERTPFE* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1143 216 MobiDBLite consensus disorder prediction 165 179 - -
Gso18g1143 216 MobiDBLite consensus disorder prediction 155 216 - -
Gso18g1143 216 MobiDBLite consensus disorder prediction 81 101 - -
Gso18g1143 216 PANTHER PROTEIN YABBY 6-RELATED 1 179 IPR006780 GO:0007275
Gso18g1143 216 MobiDBLite consensus disorder prediction 74 101 - -
Gso18g1143 216 SUPERFAMILY HMG-box 109 161 IPR036910 -
Gso18g1143 216 Gene3D High mobility group box domain 111 205 IPR036910 -
Gso18g1143 216 Pfam YABBY protein 11 161 IPR006780 GO:0007275
Gso18g1143 216 MobiDBLite consensus disorder prediction 180 209 - -
Gso18g1143 216 PANTHER AXIAL REGULATOR YABBY 4 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1143 Gso-Chr18 21229045 21232083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1143 2 216 C2C2-YABBY Transcription Factor Family AT1G23420 57.269 1.58e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso18g1143 YABBY 1.6e-62 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1143 K25796 - gmx:100807136 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0262 1 3111965 3114421 Gso18g1143 18 21229045 21232083 PCT
Gso18g1143 18 21229045 21232083 Gso1g0262 1 3111965 3114421 PCT