Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1128 ATGAGTAGTGTGACTAGTGGGGGTGATAATCGAAAAATATCCAAAGGTCGTCGGTCATCATCATTAGAGGAAGAAGCTGGAGTTGGAGGTAACATAAGAGGAGAAAGTCCTCTGAAGAAAGGCCCATGGACTGCAGCAGAGGATGCAATTTTGGTAGAATATGTCAAAAAACACGGACAAGGCAATTGGAATGCAGTACATAAATATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAGACCAGATCTAAAAAAAGGTGAATTTACTGCAGAAGAAGAGAATCGAATCCTTGAACTACATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACGGATAATGAGATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCAGGCTTACCAATCTACCCTGAAGAATTGTGCCAACGGATACTTAATTGCAATCAAGAAAGTCAAAATATTAGCATCCTGTCAAATGAAGCCTCCCAGCATGGTGATCTGTCACAAACAGACTTTGATATACCAGACGTGGAATTCAAAATTTTCAAATTTCGTCATGGTCTATCACATGGACAGTCAATATTTGATATGCCTGAAAGTAGCTTGTTTGATCAAAGTTCAGACTCATCCCATAGTTATAACTTGTTCCCAACTATGCGTCCTACAAAACGCCCTCGGGAGTCAGAAATGCTATATGATAGTTTTGAAAGTTGTACAATTAATGCTGCCCCACTATTTGATCAGTATGACAATTATACTTCTGAAAAAATTTCTGACCATCCTAGGTTGTCTCTTCCACGTGATCCCGTTCTTAACACCAATGATCAGTTTAATGGTGATAACCTTACCGGCAGCCATGCCGCATTAAATGGCAATGCCTCTTCTTCTGTGCCCATGTTTAGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCTGAAACTCAACATGGTAGCTGGGGCACGCCTACGTCCCCGCTTCCTTCACTCGAGTCTGTTGATACATTGATTCAATCTCCTGTTGTTGAGCCTATTCTATTAGATCCCATTTCTCCGCAGAGCAGTGGTTTGCTGGAAGCGATAGTCCACAACTCGAAAAGCTTGAAAGGCTCAAACAATGATTTATTATTACAAGAAACAATTGGTACAACCAATGAAGTAGCTAAGAGTTCAACCTTGAATCATTCCTTTCAGACAAAATGGTATGAACTAGGGGAGCCAAATTCCCCCTTTGGTCAATCTGCTGCTTCAGTTCTAATTGAGTATACTCCTGTAAGCATGTGCTCAGTGGATGGCCCCCAATCAATTGAAACCACTCAGGATCATGATGATAAGCATGAAGCACTCACCACCCAATTTCCAGACAGTTCCAGGAAGAAAAAAAATATATTGAAACAGATGGATTATACACAGCCAGATGCTTTACTTGACTTAGGTTGGTTTGGGAATAGCACCGAGTATGGAAGTGATCAATCTGTTCTGCAAGATGCTTTAAGTGCACTTCTTGGTGAAGATTGTCAGCGCTAG 1566 0.4195 MSSVTSGGDNRKISKGRRSSSLEEEAGVGGNIRGESPLKKGPWTAAEDAILVEYVKKHGQGNWNAVHKYSGLARCGKSCRLRWANHLRPDLKKGEFTAEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPEELCQRILNCNQESQNISILSNEASQHGDLSQTDFDIPDVEFKIFKFRHGLSHGQSIFDMPESSLFDQSSDSSHSYNLFPTMRPTKRPRESEMLYDSFESCTINAAPLFDQYDNYTSEKISDHPRLSLPRDPVLNTNDQFNGDNLTGSHAALNGNASSSVPMFRAMKLELPSLQYPETQHGSWGTPTSPLPSLESVDTLIQSPVVEPILLDPISPQSSGLLEAIVHNSKSLKGSNNDLLLQETIGTTNEVAKSSTLNHSFQTKWYELGEPNSPFGQSAASVLIEYTPVSMCSVDGPQSIETTQDHDDKHEALTTQFPDSSRKKKNILKQMDYTQPDALLDLGWFGNSTEYGSDQSVLQDALSALLGEDCQR* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1128 521 MobiDBLite consensus disorder prediction 1 40 - -
Gso18g1128 521 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Gso18g1128 521 SMART sant 92 140 IPR001005 -
Gso18g1128 521 SMART sant 39 89 IPR001005 -
Gso18g1128 521 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 519 - -
Gso18g1128 521 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Gso18g1128 521 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Gso18g1128 521 SUPERFAMILY Homeodomain-like 37 134 IPR009057 -
Gso18g1128 521 Gene3D - 95 171 - -
Gso18g1128 521 Gene3D - 39 92 - -
Gso18g1128 521 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Gso18g1128 521 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Gso18g1128 521 CDD SANT 42 87 IPR001005 -
Gso18g1128 521 CDD SANT 95 136 IPR001005 -
Gso18g1128 521 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Gso18g1128 521 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1128 Gso-Chr18 20752524 20758300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1128 38 518 MYB Transcription Factor Family AT5G06100 37.988 2.93e-87 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g1128 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1128 K09422 - gmx:100818609 1058.13