Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1124 ATGGCGAGTTTGCTGAGCATCTCCCACGTGGCAAGGAAAACGCCAGTGGTGATGGCGATTTCGTACCAGCTGCAAGTTGCCAGCTCTTCTGGCGAGTTTATTGAGTGGGTAGGTTGCTGTTGTAGTGGGAGTTGCATTGATGTGGTGAAGCCTGAAGAGGAAAAGGCTGAAGTGTGCAACATGGCTCCCATTTGCAGGGATGACCATTTTCATTTTCAGCATCCAGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTGTATTCTGGGAATCAATTGGAACCCAAGTTTTGGTCCCTATTTTTGGTGGTCTTATTGAGCTCTTCACTGAATTTGATTCCAATGGATATGAATATCATAGAGCTCATAACAGCACATGGTTGTGTCTCTTCAGAGCAAGAAACCATATCTGCACAGAGCTACACCAGTCTGAACATCAATGAACATCTGCCATTAAGGGAACAATACTCACAGTGGTGTTCACCACACATTATCTCTCCTATCCCCAAAACTAAAATGCCCAAGTACAACAAAACTTCAGGGAAACGGCAGAGAGGTTTGACATCCCATTGTAGCAATGATGACGATGATAAATCAAAATCGGTCAAGGAGTCTCAGAAGGAAGTTTACCAGGCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAAGATAAAGAAAGGGCTTTTTACTCTGCGGTATCTAGTCCCAAGGATAACCAAGATGGATAGAGCTGCAATTCTTGCCGACGCGGTTGACCATATAAAGGAATTGCAAATGCAAGTAAGAGAACTTAAAGATGAGGTCAGGGAATTGGAAGAACAGGAATGCGAGAAGAACACACCACAATTGAGGATAACAAAAGCCAAAAAACAAGAAGGAACCGGAAGTAACCCTCCTCTTAATCAAAGTTCTTCTGGTTGCACTAAAAAGATGCAAATGGAGGTACAAGAGTTTGCATAA 981 0.4322 MASLLSISHVARKTPVVMAISYQLQVASSSGEFIEWVGCCCSGSCIDVVKPEEEKAEVCNMAPICRDDHFHFQHPVRTKACEALAQLPFALSLYSGNQLEPKFWSLFLVVLLSSSLNLIPMDMNIIELITAHGCVSSEQETISAQSYTSLNINEHLPLREQYSQWCSPHIISPIPKTKMPKYNKTSGKRQRGLTSHCSNDDDDKSKSVKESQKEVYQAKNLVTERNRRNKIKKGLFTLRYLVPRITKMDRAAILADAVDHIKELQMQVRELKDEVRELEEQECEKNTPQLRITKAKKQEGTGSNPPLNQSSSGCTKKMQMEVQEFA* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1124 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 281 IPR036638 GO:0046983
Gso18g1124 326 Coils Coil 254 284 - -
Gso18g1124 326 MobiDBLite consensus disorder prediction 176 214 - -
Gso18g1124 326 MobiDBLite consensus disorder prediction 194 213 - -
Gso18g1124 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 264 IPR011598 GO:0046983
Gso18g1124 326 Pfam Helix-loop-helix DNA-binding domain 222 265 IPR011598 GO:0046983
Gso18g1124 326 MobiDBLite consensus disorder prediction 293 318 - -
Gso18g1124 326 PANTHER TRANSCRIPTION FACTOR BHLH90 61 324 - -
Gso18g1124 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 61 324 - -
Gso18g1124 326 MobiDBLite consensus disorder prediction 281 326 - -
Gso18g1124 326 Gene3D - 203 282 IPR036638 GO:0046983
Gso18g1124 326 SMART finulus 221 270 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1124 Gso-Chr18 20542986 20546716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1124 33 96 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 42.188 1.17e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso18g1124 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1124 - - gsj:114397076 626.706