Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1123 ATGAGCATGCAACATTTAGGCGCTTCTTTCGACTCAGCTCAGTTCAAAAGTGTTCAGATAGTTTTTACCTATGAAATGGTTATGGAAATGACCAATGCATTTTCTACTCAAAATGTTATTGGGGAAGGAGGGTTTGGGTGTGTTTACAAAGGTTGGCTGCCAGATGGAAAAACAGTTGCAGTAAAGCAGCTTAAGGCTGGCAGTGGACAGGGAGAAAGGGAATTCAAGGCTGAAGTGGAGATCATCAGCCGTGTTCATCATCGACATTTGGTGGCATTAGTTGGTTATTGCATATGTGAGCAGCAAAGAATTCTTATCTATGAGTATGTTCCTAATGGAACACTCCATCATCACTTGCATGAAAGTGGAATGCCGGTGTTAGATTGGGCCAAGAGGCTAAAGATTGCAATAGGTGCTGCAAAGGGCCTAGCATATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATAAAGTCCGCAAACATACTTTTGGATAATGCTTATGAGGCACAGGTTGCTGACTTTGGACTTGCGAGGTTAGCTGATGCTGCCAATACCCATGTATCAACTAGGGTCATGGGAACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACAGACAGATCAGATGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTGTAACGGGAAGGAAACCCGTTGATCAAACTCAGCCTTTGGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATTGAGACACGTGATTTTAGTGATCTAACAGATCCAAGACTCAAAAAACACTTTGTGGAGAGTGAAATGTTCAGAATGATTGAGGCAGCTGCAGCTTGTGTTCGCCACTCTGCTCTTAGACGGCCTCGTATGGTTCAGGTGGTAAGAGCCTTGGACTGTGGAGACGAAAGTTCTGATATATCTAATGGGATGAAATATGGTCATAGCACGGTTTATGATTCTGGCCAATATGATAAAGCAATTATGCTATTCAGGAGGATGGCCAATGGCACCTTTGATGATTCTGATTTTGATATGGTAAGTAGAGAATACAGTTTGTCAAGAAACACCTCAATGACCTCAAGAGGATCCCAACAAGAATTGATACAGCATAGTTCTAGTGGCGAGTTTGATTCTAGAGATATCAACATGCATAGGAGCAGTATTGAATGA 1200 0.4283 MSMQHLGASFDSAQFKSVQIVFTYEMVMEMTNAFSTQNVIGEGGFGCVYKGWLPDGKTVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVALVGYCICEQQRILIYEYVPNGTLHHHLHESGMPVLDWAKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDNAYEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELVTGRKPVDQTQPLGDESLVEWARPLLLRAIETRDFSDLTDPRLKKHFVESEMFRMIEAAAACVRHSALRRPRMVQVVRALDCGDESSDISNGMKYGHSTVYDSGQYDKAIMLFRRMANGTFDDSDFDMVSREYSLSRNTSMTSRGSQQELIQHSSSGEFDSRDINMHRSSIE* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1123 399 Gene3D Transferase(Phosphotransferase) domain 1 110 327 - -
Gso18g1123 399 MobiDBLite consensus disorder prediction 364 399 - -
Gso18g1123 399 Pfam Protein tyrosine and serine/threonine kinase 36 305 IPR001245 GO:0004672|GO:0006468
Gso18g1123 399 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 7 376 - -
Gso18g1123 399 CDD STKc_IRAK 40 308 - -
Gso18g1123 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Gso18g1123 399 Gene3D Phosphorylase Kinase; domain 1 3 109 - -
Gso18g1123 399 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 7 376 - -
Gso18g1123 399 SUPERFAMILY Protein kinase-like (PK-like) 14 307 IPR011009 -
Gso18g1123 399 MobiDBLite consensus disorder prediction 364 386 - -
Gso18g1123 399 SMART serkin_6 34 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1123 399 ProSiteProfiles Protein kinase domain profile. 34 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1123 399 ProSitePatterns Protein kinases ATP-binding region signature. 40 62 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1123 Gso-Chr18 20538370 20542892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1123 7 382 Trihelix Transcription Factor Family AT1G70460 69.681 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso18g1123 PK_Tyr_Ser-Thr 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1123 - - gmx:100797563 795.038