Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1118 ATGCAAAACATGTCTCTAATAGCTTCACTCTCCTCCACAACTTCACAACTCACTTCCCTTCCTTCCCTCCCTTCTTCCACCTCTCCACTTTCTCGCAAATTTCCCCTCACTTTCCGGGAAAAAAACAGAACTCCAATCACACCTCACAAGCTCCCTTTTTCAGCAAGGCCTGCCACCACCAGAGTGGTGTTGGTGAAGTCTCAGGCCACAGCACCTGCTTCTTCTGAGGCTGTGGCAGTGACACCTGTGTCTTCTGAGATGAGGGCATGGGTCTATGGGGAATATGGGGGTGTGGATGTTCTGAAGCTGGACTCCAATGTTACTGTGCCTGATGTGAAGGAAGATCAGGTTCTAATCAAAGTTGTTGCTGCTGCTCTTAACCCTGTTGATGCCAAGAGGAGGCAGGGAAAGTTTAAGGCCACTGATTCTCCCCTTCCGACTGTTCCGGGCTACGATGTAGCGGGTGTGGTGGTGAAGGTTGGTAGTCAAGTGAAGGACTTTAAAGTGGGTGATGAAGTGTATGGAGATGTAAATGAGAAAGCACTAGAAGGACCTAAGCAATTCGGGTCTTTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCATCAAAACCGAAGAATTTGGACTTTGCTCAAGCTGCTGCTCTTCCTCTAGCAATTGAGACTGCTTATGAGGGTTTGGAGAGGACTGGATTTTCTCCTGGTAAATCTATTCTTGTTCTAAATGGTTCTGGAGGAGTTGGTAGCCTAGTGATTCAGCTAGCTAAGCAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTTCGAGTACTAGAAATTTGGACCTATTGAAAAGCTTGGGAGCTGATTTGGCTATTGACTACACAAAAGAGAACTTTGAAGATTTGCCAGAAAAATTTGATGTAGTTTATGATGCCATTGGGCAATGTGACAGGGCAGTGAAGGCTGTGAAAGAAGGCGGCAGTGTTGTGGCACTCACAGGTGCTGTTACACCACCTGGCTTCAGATTTGTAGTTACTTCCAATGGAGCTGTTCTGAGGAAACTAAACCCTTACTTAGAAAGTGGGAAGGTGAAGCCAATTGTAGACCCCAAAGGTCCATTCTCCTTTGATAAGCTTGCTGAAGCCTTCTCTTACCTTGAAACAAACCGAGCCACTGGAAAGGTTGTTATACATCCAATCCCTTGA 1188 0.4638 MQNMSLIASLSSTTSQLTSLPSLPSSTSPLSRKFPLTFREKNRTPITPHKLPFSARPATTRVVLVKSQATAPASSEAVAVTPVSSEMRAWVYGEYGGVDVLKLDSNVTVPDVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSQVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLASKPKNLDFAQAAALPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLDLLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAVKEGGSVVALTGAVTPPGFRFVVTSNGAVLRKLNPYLESGKVKPIVDPKGPFSFDKLAEAFSYLETNRATGKVVIHPIP* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1118 395 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 236 257 IPR002364 GO:0008270|GO:0016491
Gso18g1118 395 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 209 332 IPR036291 -
Gso18g1118 395 Gene3D - 228 342 - -
Gso18g1118 395 CDD MDR_like_2 87 391 - -
Gso18g1118 395 Pfam Zinc-binding dehydrogenase 280 391 - -
Gso18g1118 395 Gene3D - 94 391 - -
Gso18g1118 395 Pfam Alcohol dehydrogenase GroES-like domain 115 177 IPR013154 -
Gso18g1118 395 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 58 395 IPR044626 GO:0016628
Gso18g1118 395 SMART PKS_ER_names_mod 96 391 IPR020843 GO:0016491
Gso18g1118 395 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 58 395 - -
Gso18g1118 395 SUPERFAMILY GroES-like 85 241 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1118 Gso-Chr18 20422260 20425541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1118 111 283 Monolignol Biosynthesis Gene Families AT4G39330 25.126 4.75e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1118 K18980 - gmx:100780585 701.049