Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1110 ATGTTCATATTAATTATTTATGTCAAAACCACCTCCACCATTATGAGCAATATGTCCAATAGCATGTTGGATCTCACTTGTTCCAATGTAATGAAATTTCAAGGGAAAAGCTCCTTGTTATTGCTTCTCCTTGTGCTCATAGCCCTTCATCTTGCATCTTCTCGAACTTCTGTTTATAATTGTGTCCTTGATATTCAATTTTCTCCATCCTTGATTAGTTCAAATTGTGAATTGTACAATTGGGGAGGGTTTACCCATGGCTGTTGTGGACCATATTTTGATGATTACCTATATGCCTTGGGGCTGAGGGCCAACCAAACTGGAAAAATATTCTTGAATTCCTCAGAGCAAGAAAACTGCATAGCATCAATGCAAGCTTTTGACAAAAACTTCACTTGTTATGGGATAGAGAAGCTAACAAGTGGAGTTGGTGGTTGCTCTGATTACACCATCACAGATGTTATTAATCATCATGGAGACAACTTTAGGAGACTGAATGAAGATTGCATGCCTTTTAGAAGAAATGGCAGGCCAAATGAAACTTGCACCAAATGTTTGAAAGCATGGGAGGATATCAGTGCAAAATCAGACTCTACAAGGGGATCAGAATCAGCAAATATCAATGTTTATCTTTGTAGGTTTGCTGTGCTTGTCTCAATAACAAGCACAAGAATTTATGATAGGGAATCAATTCAGGAAGTCTATAAATACCTTGGGGAACACACCCTTTCTGCAGTTAATCAAGAAGTTAAGGTTAAGGCTAGTGCTAATGCTAATATCAACTCAGCAGGTCTCTGGATTGCCTTCGGTATAACAGGAGTTACAGCAGTGGTGTTTCTTGCCGCACTAGCATTATTTATCACAAGAATTAAAAGTGCTCCAACCGTACAAGATGAGTCTGATTCAACTTCACCGAAGATAACATTGAAGGATGTTTATGTAGCAACAAACAATCTCAGCGCTTCAAATTTCATAGGCCAAGGCATAGCCGGAAAAGTGTACAAAGGTGTGCTCTCCAACAATCAGTCTGTTGCAGTGAAGCATATCACCAATGAAGGTTACATGGAGACATTTGTTAGAGAAGTGAGAAGCCTTTCCCATGTTAGACATCAAAACCTAGTAGCTTTGCTGGGATACTGTGAAAGTGAAGCTGAATGCTTCCTAGTGTATGAGCTATGCCACAATGGAAACCTTTCAGAGTGGCTATTTGGCAATGGTAAAGTTCTTTCATGGATTCAAAGACTAGAGATTGTCATTGATAGTGCAAGAGGTCTTGAGTTTCTCCACACCTACCCAAATGGCTGCATTGTTCACCGTGATATAAAGCCATCAAACATTCTTATTGATGCCAACTTCCAAGCAAAGCTTTCAGATTTTGGGTTGTCCAGGGTTATGGACCTTGGTCAATCCTATGTGAGCTCTGAAGTAAGAGGAACGTTTGGTTATATTGATCCTGAATATAGGACAAATCACCATGTAAAAGCCTCAGGAGATGTCTACAGCTTTGGAATAGTGTTATTGCAACTTCTATCAGGACAAAGGGTACTTAACATTGATTTCCAGAGACCAATGTCTCTGGGTAAAATGGCCAGAGATGTTGTTAGAGGCGGTGATATGTCAGAATTTGCTGATCCTAAACTCAAAAGAGAGTACTCTGTTGAAGCATTTGACATCGTATTAAAGCTAGCTTTGTCTTGCATAGGGCTCAAGCAGCAAAGGCCATCTATAGAGCAAGTGTTGTATAGCCTAGAAAAGGCACTCGATATCTCTTTATAA 1776 0.3964 MFILIIYVKTTSTIMSNMSNSMLDLTCSNVMKFQGKSSLLLLLLVLIALHLASSRTSVYNCVLDIQFSPSLISSNCELYNWGGFTHGCCGPYFDDYLYALGLRANQTGKIFLNSSEQENCIASMQAFDKNFTCYGIEKLTSGVGGCSDYTITDVINHHGDNFRRLNEDCMPFRRNGRPNETCTKCLKAWEDISAKSDSTRGSESANINVYLCRFAVLVSITSTRIYDRESIQEVYKYLGEHTLSAVNQEVKVKASANANINSAGLWIAFGITGVTAVVFLAALALFITRIKSAPTVQDESDSTSPKITLKDVYVATNNLSASNFIGQGIAGKVYKGVLSNNQSVAVKHITNEGYMETFVREVRSLSHVRHQNLVALLGYCESEAECFLVYELCHNGNLSEWLFGNGKVLSWIQRLEIVIDSARGLEFLHTYPNGCIVHRDIKPSNILIDANFQAKLSDFGLSRVMDLGQSYVSSEVRGTFGYIDPEYRTNHHVKASGDVYSFGIVLLQLLSGQRVLNIDFQRPMSLGKMARDVVRGGDMSEFADPKLKREYSVEAFDIVLKLALSCIGLKQQRPSIEQVLYSLEKALDISL* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1110 591 ProSiteProfiles Protein kinase domain profile. 319 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1110 591 Pfam Protein kinase domain 323 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1110 591 PANTHER OS01G0750732 PROTEIN 54 590 - -
Gso18g1110 591 SMART serkin_6 319 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1110 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Gso18g1110 591 Gene3D Phosphorylase Kinase; domain 1 285 392 - -
Gso18g1110 591 Pfam SPARK 60 202 IPR043891 -
Gso18g1110 591 PANTHER - 54 590 - -
Gso18g1110 591 SUPERFAMILY Protein kinase-like (PK-like) 301 583 IPR011009 -
Gso18g1110 591 Gene3D Transferase(Phosphotransferase) domain 1 393 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1110 Gso-Chr18 20183806 20187572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1110 307 589 Receptor kinase-like Gene Family AT1G67720 40.484 1.69e-59 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Gso18g1110 Pkinase 9.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1110 - - gsj:114395768 1150.96