Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1107 ATGGCTTCTTCACTCAGAATTTCAAGACTCATCTCTCGCTCCTTTTCTTCTACCTCCTTCTTTTCACGAGGTGGGAATGGTTTCCTTGGTTCAAGACACTGCAAATACAGCACTTCTTCTGCCATTGAAGAAGAACCCGTTAAACCATCAGTGCAAGTAGAACACACCCAACTCTTAATTGATGGAAAATTTGTAGATGCTGCTTCTGGTAAAACTTTTCCAACTTTAGATCCTAGGACAGGTGAAGTAATTGCTCATGTTGCTGAGGGTCACTCTGAGGATGTTGATCGAGCAGTTGCAGCTGCACGAAAAGCATTTGATCATGGACCATGGCCTAAGATGACGGCTTATGAACGGCAAAGGATCTTGTTGCGTGCAGCTGATCTGCTTGAGAAGCATAATGATGAGCTTGCAGCACTTGAGACTTGGGATAATGGAAAGCCTTATGAACAAGCTGCTAAGATTGAAGTTCCAATGCTTGTTCGCCTGATTCGATACTATGCTGGTTGGGCAGATAAGATCCATGGTCTAACAGTTCCAGCTGATGGACCATATCATGTGCAAACATTGCATGAACCAATTGGTGTTGCCGGTCAGATCATTCCTTGGAACTTCCCTCTTCTCATGTTTGCCTGGAAGGTTGGACCGGCATTGGCCTGTGGCAACACCATTGTTCTCAAAACAGCTGAGCAGACACCGTTATCTGCTTTATATGCAGCAAAACTATTTCATGAGGCTGGACTTCCTGCTGGTGTTTTAAATGTAGTATCTGGCTTTGGTCCAACTGCTGGTGCTGCTCTTGCTAGCCACATGGAAGTTGACAAGCTTGCTTTTACTGGTTCCACTGATACTGGGAAAGTTGTCCTTGAACTGGCAGCTAAAAGCAATCTTAAGCCTGTTACTTTGGAGCTTGGTGGGAAATCCCCCTTTATTGTGTGTGAAGATGCTGATGTAGATCAGGCTGTTGAGCTAGCCCATTTTGCTTTATTCTTTAATCAGGGACAATGTTGCTGTGCTGGGTCTCGAACATTTGTACATGAAAGTGTATACGATGAGTTTGTTGAGAAAGCAAAGGCTCGTGCTTTGAAGCGTGTTGTTGGTGATCCATTCAAGGGGGGAATAGAGCAAGGTCCTCAGATTGATTCAGATCAATTTGAGAAAATACTGAGGTACATCAGATCTGGTGTTGAAAGTGGGGCAACCCTTGAAACCGGAGGAGACAAGCTTGGCAACAAGGGCTTCTACATTCAACCTACAGTCTTCTCAAATGTTAAGGATGGCATGCTGATTGCAAGGGATGAGATCTTTGGTCCAGTCCAATCCATATTAAAATTCAAGGACCTTGGCGAGGTAGTTCAAAGAGCAAATAACACACGTTACGGGCTTGCGGCCGGAGTGTTCACAACGAACATGGACACTGCCTACACTTTGACGCGGGCACTGAGAGTTGGAACAGTGTGGATAAACTGCTTTGACACATTTGATGCTGCAATTCCCTTTGGAGGGTACAAGATGAGTGGTCAAGGCAGAGAAAAAGGAGAGTATAGTCTCAAAAACTACTTGCAAGTGAAGGCTGTTGTTAATCCCCTGAAAAACCCAGCATGGCTTTGA 1611 0.4482 MASSLRISRLISRSFSSTSFFSRGGNGFLGSRHCKYSTSSAIEEEPVKPSVQVEHTQLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDHGPWPKMTAYERQRILLRAADLLEKHNDELAALETWDNGKPYEQAAKIEVPMLVRLIRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYAAKLFHEAGLPAGVLNVVSGFGPTAGAALASHMEVDKLAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESVYDEFVEKAKARALKRVVGDPFKGGIEQGPQIDSDQFEKILRYIRSGVESGATLETGGDKLGNKGFYIQPTVFSNVKDGMLIARDEIFGPVQSILKFKDLGEVVQRANNTRYGLAAGVFTTNMDTAYTLTRALRVGTVWINCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVNPLKNPAWL* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1107 536 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 28 536 - -
Gso18g1107 536 SUPERFAMILY ALDH-like 51 529 IPR016161 GO:0016491
Gso18g1107 536 Pfam Aldehyde dehydrogenase family 64 526 IPR015590 GO:0016491
Gso18g1107 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 60 524 IPR016162 GO:0016491
Gso18g1107 536 CDD ALDH_F2BC 53 527 - -
Gso18g1107 536 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 495 IPR016163 GO:0016620
Gso18g1107 536 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 330 341 IPR016160 GO:0016491
Gso18g1107 536 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 28 536 - -
Gso18g1107 536 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 302 309 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1107 Gso-Chr18 20118984 20122742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1107 6 536 Aldehyde Dehydrogenase Gene Family AT3G48000 77.903 0.0 882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0280 1 3296495 3300774 Gso18g1107 18 20118984 20122742 PCT
Gso2g0283 2 3078915 3083306 Gso18g1107 18 20118984 20122742 PCT
Gso18g1107 18 20118984 20122742 Gso1g0280 1 3296495 3300774 PCT
Gso18g1107 18 20118984 20122742 Gso2g0283 2 3078915 3083306 PCT