Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1100 ATGGCTTCAAGATCATATGCTAATCTCTTTGACTTAGCTAGTGGAGACTTTCTTGATTTTCCTTGCACCCCAAGAGCTCTTCCAAGGGTTATGACTGTTCCTGGAATTATTTCGGACCTGGATGGTTATGGTTGTAATGATGGGGATTCAGATGTTAGTTCTTCTGGATGTAGGGAGCGGAAAATCATTGTGGCAAACATGTTGCCAGTGCAGGCTAAAAGAGATATAGAAACTGCTAAATGGGTTTTCAGTTGGGATGAGGATTCAATTTTGTTACAATTAAAAGATGGTTTTTCTGCTGATAGTGAGGTAATCTATGTGGGTTCTCTCAAGGTTGAAATAGATGCCTGTGAGCAGGATGCAGTTGCTCAGAGATTGCTGGATGAATTTAATTGTGTACCTACCTTTCTTCCCCATGATCTCCAAAAAAGGTTCTACCTTGGATTTTGTAAGCAGCAACTTTGGCCTCTCTTTCATTATATGCTACCTATATGCCCAGATCACGGTGATCGCTTTGACCGTATACTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTCATGGAAGTAATTAATCCTGATGATGATTTTGTTTGGGTTCATGATTATCACTTAATGGTTTTGCCTACTTTCTTGAGGAAGCGATATAATCGGGTTAAACTTGGGTTCTTTCTGCATAGTCCTTTCCCTTCATCTGAAATCTACCGAACTTTACCAGTAAGGGATGAAATTTTGAGGGGATTGTTGAACTCTGATTTAATTGGCTTTCATACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGTCTGGACTATGAATCTAAGCGAGGACATATAGGGCTTGATTACTTTGGCCGCACTATATTTATTAAAATTTTGCCTGTAGGCATTCACATGGGTAGGCTTGAATCTGTGTTTAATCTTTCTTCTACATCTGCTAAACTAAAAGAGGTTCAGGAAGAGTTTAAGGATAAGAAAGTAATTCTTGGTATTGATGACATGGATATTTTTAAGGGCATTAGTCTGAAACTTCTAGCTGTGGAGCATCTGCTGCAGCAGAATCCAGATTTGCAGGGCAAAGTTATCCTAGTTCAAATTGTAAATCCTGCAAGGGGCTCGGGGAAGGATGTTCAGGAAGCAAAGAACGAAACATATTTAATTGCCCAGAGAATCAACGATACATATAGCTCAAATAATTATCAGCCAGTCATTCTCATTGACCGCCCTGTTCCTCGCTTTGAGAAGAGTGCCTATTATGCTGTAGCTGAATGTTGCATTGTTAATGCTGTAAGGGATGGTATGAACTTAGTCCCATACAAATATATCGTCTGCAGACAGGGAACTGCACAACTAGATGAAGCATTGGATAGAAAAAGTGATTCTCCTCGTACAAGCATGCTTGTGGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTTAGTGGGGCAATAAGGGTCAATCCCTGGGACATAGATGCCGTAGCCGATGCTATGTATGCAGCCCTTACAATGAGTGTTTCAGAGAAGCAGTTGCGCCATGAGAAACACTATCGGTATGTGAGTTCTCATGATGTTGCATATTGGGCGCACAGCTTTATGCTGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGATGCTGGGGATTTGGTTTGGGCTTGGGGTTCAGAGTTGTTTCTCTTTCTCATGGTTTCAGGAAGCTGTCAATTGACCATATTGTTTCAGCATACAAGAGAACCAATAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTGTACCTCAATCTTCCATAAGTAAAACCCCCAGCCCTGAAGTCATCTCTGTCTTAAATGCTCTGTGTAACAATCCCAAGAATATTGTGTTCATTGTTAGTGGGAGGGGGAGGGATTCACTGAGTGAATGGTTTACTTCATGCCAAATGCTTGGACTTGCAGCAGAACATGGGTACTTTTTAAGGTGGAACAAAGATTCAGAATGGGAAGCAAGTCACTTATCTGCGGACCTTGATTGGAAAAAGATGGTGGAACCTGTGATGCAGTTGTATACAGAAGCAACTGATGGTTCTAATATTGAAGTTAAGGAGAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAATTGTTGGATCACTTGGAAAGTGTGCTTGCTAATGAACCAGCAGCTGTTACGAGAGGTCAGCATATTGTTGAAGTTAAGCCACAGGGAATAAGCAAGGGGTTGGTAGCTGAACAGGTTCTTATGACCATGGTTAATGGCGGCAATCCACCAGATTTTGTGCTGTGCATTGGAGATGATAGGTCCGATGAGGACATGTTTGAGAGCATTTTGAGGACAGTTTCGTGCCCATCATTACCATCAGCTCCAGAGATCTTTGCCTGCACTGTGGGTAGGAAGCCTAGCAAGGCCAAGTATTTTCTTGATGATGCTTCTGATGTTGTGAAGTTGCTTCAGGGCCTTGCTGCTTCATCCAATCCAAAACCCAGGCATCTTGCTCATTCTCAAGTCTCTTTTGAGAGCACAGTTTGA 2586 0.4192 MASRSYANLFDLASGDFLDFPCTPRALPRVMTVPGIISDLDGYGCNDGDSDVSSSGCRERKIIVANMLPVQAKRDIETAKWVFSWDEDSILLQLKDGFSADSEVIYVGSLKVEIDACEQDAVAQRLLDEFNCVPTFLPHDLQKRFYLGFCKQQLWPLFHYMLPICPDHGDRFDRILWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVFNLSSTSAKLKEVQEEFKDKKVILGIDDMDIFKGISLKLLAVEHLLQQNPDLQGKVILVQIVNPARGSGKDVQEAKNETYLIAQRINDTYSSNNYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAQLDEALDRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADAMYAALTMSVSEKQLRHEKHYRYVSSHDVAYWAHSFMLDLERACKDHYTKRCWGFGLGLGFRVVSLSHGFRKLSIDHIVSAYKRTNRRAIFLDYDGTVVPQSSISKTPSPEVISVLNALCNNPKNIVFIVSGRGRDSLSEWFTSCQMLGLAAEHGYFLRWNKDSEWEASHLSADLDWKKMVEPVMQLYTEATDGSNIEVKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAAVTRGQHIVEVKPQGISKGLVAEQVLMTMVNGGNPPDFVLCIGDDRSDEDMFESILRTVSCPSLPSAPEIFACTVGRKPSKAKYFLDDASDVVKLLQGLAASSNPKPRHLAHSQVSFESTV* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1100 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 852 IPR001830 GO:0003824|GO:0005992
Gso18g1100 861 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Gso18g1100 861 Gene3D - 591 709 IPR023214 -
Gso18g1100 861 Gene3D - 721 853 IPR023214 -
Gso18g1100 861 Gene3D Glycogen Phosphorylase B; 54 313 - -
Gso18g1100 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 549 - -
Gso18g1100 861 Gene3D Glycogen Phosphorylase B; 314 529 - -
Gso18g1100 861 TIGRFAM T6PP: trehalose-phosphatase 590 839 IPR003337 GO:0003824|GO:0005992
Gso18g1100 861 Pfam Trehalose-phosphatase 595 829 IPR003337 GO:0003824|GO:0005992
Gso18g1100 861 SUPERFAMILY HAD-like 592 840 IPR036412 -
Gso18g1100 861 CDD HAD_TPP 593 834 - -
Gso18g1100 861 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 852 - -
Gso18g1100 861 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 593 794 IPR006379 -
Gso18g1100 861 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1100 Gso-Chr18 19818757 19824024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1100 1 861 Trehalose Biosynthesis Gene Families AT1G60140 73.519 0.0 1365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1100 K16055 - gmx:100775779 1749.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0283 1 3358617 3364008 Gso18g1100 18 19818757 19824024 PCT
Gso2g0279 2 3024035 3029323 Gso18g1100 18 19818757 19824024 PCT
Gso18g1100 18 19818757 19824024 Gso1g0283 1 3358617 3364008 PCT
Gso18g1100 18 19818757 19824024 Gso2g0279 2 3024035 3029323 PCT