Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1093 ATGAATTGGGTTCACTCTCAAATCTGCCATAGTACTGATGCTATCAACAACCCTAGTAGTATTTGTTCTTCTTCTTCTTCTGCATCATTGCCTTATAGTTCCGGCTACAAGAAACAACTAGCCTCTCCTCCTCCTCTAGCTTCTTCATCTGGCACCAGAATAAGCCCTGCACTTGTTTTCATCTTTGTCATTCTAGCAATTGTGTTCTTCATCTCTGGTCTCCTTCACTTTCTTGTTAGATTCCTCATAAGGCACAGGTCCTCTTCTTCATCATCAATTTCTCAGTCTAATAGGTACCCTGATGACATGTCTGAATCTGATGATCCTTACCAGAGGCAGCTACAGCAGCTCTTCCATCTCCATGACTCAGGCCTGGATCAGGCCCTCATAGATGCCCTCCCAGTTTTCCTCTACAAAGACATCATAGGGTTAAAGGAGCCATTTGATTGTGCAGTGTGCCTTTGCCAGTTCTCAGAACAAGACATGCTGAGGCTGCTTCCCCTTTGCAACCATGCTTTCCACATTGATTGCATAGACACATGGCTGCTGTCAAATTCAACCTGTCCTCTCTGTAGAGGGAGTCTTTATGATCCAGGCTTTGCCTTTGAAAACCCAGTTTATGACCTTGAGGGTGTGAGGGAAGAAGATGGGGTTTCCGGAAGTGTTCCTGGTGAGGGTGTTTGTGACAACAAGCATGCAGAAAACCACACAATAAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATATTGTTGAGGGGGTGGAAACAGGGGGTGGAGGTGAGAGTAGTACAAGTAATTTGGATGTTAGGAGATGTTATTCAATGGGGTCATTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCCCCAATAGAGGTGATGGTGGAGGTGTTAGTGATAGCAGTATGAGACAATTGAAAGGGAGATTGACCAATTATGGAAATTCTTCCACTGATGATGTTGAGGGGAAAAAAATCAATATTACTAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAAGAAGGACAAGGTTTCAATTTCACAAGAAAACCATTTGGGTGGTTCTAATGTCACTGCAGCTCTGCCGTGGGTGAATAGAGCTCTAGGTACATGA 1155 0.4407 MNWVHSQICHSTDAINNPSSICSSSSSASLPYSSGYKKQLASPPPLASSSGTRISPALVFIFVILAIVFFISGLLHFLVRFLIRHRSSSSSSISQSNRYPDDMSESDDPYQRQLQQLFHLHDSGLDQALIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYDPGFAFENPVYDLEGVREEDGVSGSVPGEGVCDNKHAENHTISGKRVFSVRLGKFRSSNIVEGVETGGGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCPNRGDGGGVSDSSMRQLKGRLTNYGNSSTDDVEGKKINITRKGESFSVSKIWQWSKKDKVSISQENHLGGSNVTAALPWVNRALGT* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1093 384 Pfam Ring finger domain 149 192 IPR001841 -
Gso18g1093 384 SUPERFAMILY RING/U-box 129 198 - -
Gso18g1093 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 376 - -
Gso18g1093 384 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 376 - -
Gso18g1093 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 197 IPR013083 -
Gso18g1093 384 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Gso18g1093 384 CDD RING-H2_PA-TM-RING 149 192 - -
Gso18g1093 384 SMART ring_2 150 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1093 Gso-Chr18 19596495 19598476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1093 48 357 C3H Transcription Factor Family AT2G18650 40.118 4.04e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1093 - - gmx:100779678 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0286 1 3409352 3411139 Gso18g1093 18 19596495 19598476 PCT
Gso2g0276 2 2987567 2990413 Gso18g1093 18 19596495 19598476 PCT
Gso18g1093 18 19596495 19598476 Gso1g0286 1 3409352 3411139 PCT
Gso18g1093 18 19596495 19598476 Gso2g0276 2 2987567 2990413 PCT