Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1089 ATGACTGTGGATGAAGTTGGTAGTAGCTCCCAGTGGAGCAAAGAACAGGATAAAGCATTTGAAAATGCCTTGGCAATTCACCCTGAGGATGCTTCAGACCGGTGGGAGAAGATTGCAGCTGATGTACCAGGGAAAACCTTGGAAGAGATTAAACACCACTATGAGCTCTTGGTTGAAGATGTTAGCCAGATCGAATCTGGTTATGTGCCTTTACCATCTTATAATTCTTCTCCAGAGGGCTCAACAAGCCATGCTAGTGAAGAAGGAGCTGGCAAGAAGGGAGGCCACTCTTGGAATAGTAATAACGAATCTAATCATGGAACTAAGGCTTCAAGATCAGATCAGGAACGACGAAAGGGTATTGCATGGACAGAGGATGAACACAGGTTATTCCTCCTTGGCTTGGAAAAGTATGGGAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTGACAAGAACGCCTACACAAGTAGCAAGCCATGCCCAAAAATACTTCATTCGTCTGAACTCGATGAATAAAGACAGAAGGCGATCCAGCATACACGATATCACCAGTGTCAACAATGGAGATGTTTCAGCACCTCAAGGACCAATTACTGGTCAAACAAACGGTTCTGCGGATAATTCTGCTGGAAAATCAACCAAACCAGCCCCGCCAGCCCCAACTGCTGCCTTGGGTGTAGGAATATATGCTGGTCCTACCATTGGACAACCTATAGGAGGACCCCTCGTATCTGCAGTTGGCACCCCAGTGATGAACCTTCCTCCCCCAGCACACATGGCATATGGTCTCGGAGCACCGGTTCCTGGGGCAGTTGTTCCTGGAGCACCAATGAACTTAGGTCCTGTGCCATACCCTATGCCACATACATCTGCTCGTAGATGA 891 0.4747 MTVDEVGSSSQWSKEQDKAFENALAIHPEDASDRWEKIAADVPGKTLEEIKHHYELLVEDVSQIESGYVPLPSYNSSPEGSTSHASEEGAGKKGGHSWNSNNESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAPQGPITGQTNGSADNSAGKSTKPAPPAPTAALGVGIYAGPTIGQPIGGPLVSAVGTPVMNLPPPAHMAYGLGAPVPGAVVPGAPMNLGPVPYPMPHTSARR* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1089 296 MobiDBLite consensus disorder prediction 184 214 - -
Gso18g1089 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Gso18g1089 296 SMART sant 8 60 IPR001005 -
Gso18g1089 296 SMART sant 119 169 IPR001005 -
Gso18g1089 296 Gene3D - 121 173 - -
Gso18g1089 296 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Gso18g1089 296 CDD SANT 12 58 IPR001005 -
Gso18g1089 296 MobiDBLite consensus disorder prediction 69 84 - -
Gso18g1089 296 MobiDBLite consensus disorder prediction 20 34 - -
Gso18g1089 296 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Gso18g1089 296 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Gso18g1089 296 MobiDBLite consensus disorder prediction 69 119 - -
Gso18g1089 296 CDD SANT 122 167 IPR001005 -
Gso18g1089 296 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Gso18g1089 296 PANTHER TRANSCRIPTION FACTOR KUA1 7 284 - -
Gso18g1089 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Gso18g1089 296 MobiDBLite consensus disorder prediction 177 222 - -
Gso18g1089 296 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Gso18g1089 296 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Gso18g1089 296 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Gso18g1089 296 Gene3D - 4 71 - -
Gso18g1089 296 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 284 - -
Gso18g1089 296 MobiDBLite consensus disorder prediction 1 17 - -
Gso18g1089 296 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Gso18g1089 296 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1089 Gso-Chr18 19230466 19239942 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g1089 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1089 - - gmx:100819797 571.622