Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1088 ATGCCATTTGGTTTGGTCTCAGCTTGGAACAAGCGTCGAAGAAGCAAGTCTCAAGATCATTCAGACCCTTGGATTTATAAACCTGCAGAGTTTTGGCAGCTTGAAGATCAAACACCACAACCTACAAAAAGGAGGCATAGATCATCTGTTTTCACACTCAGGGAGATGGAACAGGCAACATTTTCATTCAGTGATGATAATCTGCTTGGAAAAGGAGGATTTGGCAGGGTCTACAGGGGCACTTTGAAGTCAGGAGAGGTTGTAGCAATCAAGAAGATGGAGCTGCCTGCAATTAAAGCAGCAGAGGGGGAGCGCGAATTCCGAGTGGAGGTTGACTTATTAAGCAGACTTGACCACCCAAATCTTGTTTCTTTGATAGGATACTGTGCTGATGGGAAGAATAGGTTCCTAGTATACGAATATATGCATAATGGTAACCTGCAAGATCATCTGAATGGAATTGGAGAAAGAAAGATGGATTGGCCTTTAAGACTTAAAGTGGCACTGGGAGCAGCAAAAGGACTTGCTTATCTTCATTCAAGTTCTTGTCTTGGAATTCCTATTGTTCATAGAGATTTCAAATCCACCAATGTTCTTCTAGATGCCAAATTTGAAGCAAAGATATCTGATTTTGGGCTTGCCAAACTAATGCCAGAAGGACAGGAGACACATGTTACTGCAAGAGTACTTGGCACCTTTGGCTATTTTGACCCTGAGTATACATCGACTGGAAAACTTACTCTACAAAGTGATGTTTATGCTTTTGGAGTTGTTCTTCTGGAGCTTTTGACAGGACGTCGAGCTGTAGATCTGAACCAGGGCCCAAATGATCAAAACCTTGTACTACAGGTGAGACACTTACTGAATGACCAAAAGAAGCTCCGTAAGGTGATAGATCCAGAGATGACTCGAAATTCTTACACCATGGAGTCTATATTCATGTTTGTCAATCTGGCGTCACGGTGTGTTCGTAGTGAGAGTAATGAGAGACCTTCAATGGTAGATTGTGTCAAAGAAATCCAAACGATTTTGTACACAAATTCAAAGGGTTTGGGAATGGTTATGCATAGCTTGAGATTGGTCTAA 1086 0.419 MPFGLVSAWNKRRRSKSQDHSDPWIYKPAEFWQLEDQTPQPTKRRHRSSVFTLREMEQATFSFSDDNLLGKGGFGRVYRGTLKSGEVVAIKKMELPAIKAAEGEREFRVEVDLLSRLDHPNLVSLIGYCADGKNRFLVYEYMHNGNLQDHLNGIGERKMDWPLRLKVALGAAKGLAYLHSSSCLGIPIVHRDFKSTNVLLDAKFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHLLNDQKKLRKVIDPEMTRNSYTMESIFMFVNLASRCVRSESNERPSMVDCVKEIQTILYTNSKGLGMVMHSLRLV* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1088 361 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 360 - -
Gso18g1088 361 Pfam Protein kinase domain 64 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1088 361 Gene3D Phosphorylase Kinase; domain 1 30 141 - -
Gso18g1088 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Gso18g1088 361 Gene3D Transferase(Phosphotransferase) domain 1 142 353 - -
Gso18g1088 361 ProSiteProfiles Protein kinase domain profile. 63 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1088 361 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Gso18g1088 361 SUPERFAMILY Protein kinase-like (PK-like) 39 345 IPR011009 -
Gso18g1088 361 PIRSF ILK 30 351 - -
Gso18g1088 361 PANTHER OS01G0750732 PROTEIN 1 360 - -
Gso18g1088 361 CDD STKc_IRAK 69 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1088 Gso-Chr18 19202521 19208592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1088 48 337 Glycoside Hydrolase AT3G07070 46.075 3.08e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Gso18g1088 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1088 - - gmx:100819242 714.531