Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1080 ATGAATGCGGAATCACCGCCGGGGCTCCTCATGTCGGTTTCCTGCCTCTCCGACTACGACCTCCTCTGCGGCGAGGACTCCTCCGGAATCCTCTCCGGAGAGTCGCCGGAGTGCTCCTTCTCCGACATCGACTCCTCACCTCCTCCGCCGTCGCCGACGACAGAGGATTGTTATTCGATCGCGAGCTTCATCGAGCACGAGCGCAACTTCGTTCCGGGATTCGAGTACCTGTCGCGGTTCCAATCTCGCTCCCTGGACGCCAACGCCAGAGAAGAATCAGTTGGATGGATTCTCAAGGTACACGCGTACTATGGCTTTCAGCCTTTGACGGCGTACCTCGCCGTCAACTATATGGATCGGTTTTTGGATTCTCGCCGGTTGCCGGAAACAAATGGGTGGCCTCTGCAACTTGTATCTGTTGCATGCTTGTCTTTGGCAGCAAAGATGGAAGAACCTCTTGTTCCATCTCTCTTGGACCTTCAGATAGAAGGTGCCAAGTACATATTTGAGCCGAGAACAATTCGTAGGATGGAGCTACTTGTTCTCGGTGTCTTAGATTGGAGGCTAAGATCAGTAACACCACTTTGCTTCCTCGCTTTCTTTGCGTGCAAAGTAGATTCAACTGGAACTTTTATCCGGTTCCTTATTTCCAGGGCAACAGAAATCATCGTATCTAATATCCAAGAGGCTAGCTTTCTTGCTTACTGGCCTTCATGCATTGCTGCTGCAGCCATACTCACTGCAGCTAATGAAATTCCTAATTGGTCTGTGGTTAAGCCCGAAAATGCTGAGTCATGGTGCGAGGGACTAAGAAAAGAAAAAGTAATAGGGTGCTACCAGTTGATGCAAGAGCTTGTGATTAACAATAACCAACGGAAACTCCCTACTAAAGTGTTGCCGCAGCTGCGAGTAACAACTCGGACCCGAATGAGGTCAAGTACTGTATCATCATTCTCATCATCCTCTTCAACCTCCTTCTCCTTGTCTTGTAAGAGGAGGAAATTAAATAACCGTTTGTGGGTAGATGACAAAGGAAACTCCGAGTGA 1047 0.4928 MNAESPPGLLMSVSCLSDYDLLCGEDSSGILSGESPECSFSDIDSSPPPPSPTTEDCYSIASFIEHERNFVPGFEYLSRFQSRSLDANAREESVGWILKVHAYYGFQPLTAYLAVNYMDRFLDSRRLPETNGWPLQLVSVACLSLAAKMEEPLVPSLLDLQIEGAKYIFEPRTIRRMELLVLGVLDWRLRSVTPLCFLAFFACKVDSTGTFIRFLISRATEIIVSNIQEASFLAYWPSCIAAAAILTAANEIPNWSVVKPENAESWCEGLRKEKVIGCYQLMQELVINNNQRKLPTKVLPQLRVTTRTRMRSSTVSSFSSSSSTSFSLSCKRRKLNNRLWVDDKGNSE* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1080 348 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
Gso18g1080 348 SMART Cyclin_C_2 192 327 IPR004367 -
Gso18g1080 348 Gene3D - 62 255 - -
Gso18g1080 348 SUPERFAMILY Cyclin-like 59 189 IPR036915 -
Gso18g1080 348 CDD CYCLIN 96 182 IPR013763 -
Gso18g1080 348 Pfam Cyclin, N-terminal domain 61 189 IPR006671 -
Gso18g1080 348 Gene3D - 73 190 - -
Gso18g1080 348 SUPERFAMILY Cyclin-like 174 290 IPR036915 -
Gso18g1080 348 SMART cyclin_7 95 183 IPR013763 -
Gso18g1080 348 Pfam Cyclin, C-terminal domain 192 303 IPR004367 -
Gso18g1080 348 PANTHER CYCLINS 15 337 IPR039361 -
Gso18g1080 348 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 15 337 - -
Gso18g1080 348 MobiDBLite consensus disorder prediction 34 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1080 Gso-Chr18 18905355 18910012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1080 9 347 Core Cell Cycle Gene Families AT1G70210 62.865 8.60e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1080 K18810 - gmx:100818190 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0309 1 3728584 3732485 Gso18g1080 18 18905355 18910012 PCT
Gso2g0251 2 2731239 2734845 Gso18g1080 18 18905355 18910012 PCT
Gso18g1080 18 18905355 18910012 Gso1g0309 1 3728584 3732485 PCT
Gso18g1080 18 18905355 18910012 Gso2g0251 2 2731239 2734845 PCT