Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1073 ATGATTGTGACTCGTTCTGCTTTGATGCTCCATCTCCAAAACCCACCAATTCGCTACCACTTCTTCTCCCACTTCAGCTATGCTCCCACCTTCCCTACTCTATTCAAACCTCGCCCTTTCTCTCCAACCACTCCACGCCAAGCACAAACCAGAACCTTTGTAAGCGCTGTTGCATCATCATCATCATCAGCACATGGTTCCAATGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTCGTGGAGTTCACTCGGTCTCTCTGATACCATTTCTCGAGCGCTCTCTAACATTGGCCTCAATAGGCCCTCTCTCGTTCAGGCTTCTTCTGTACCGTCTGTGCTGTTAGGGAAGGATGTTATTATTGCTGCGGAGACTGGGAGTGGTAAAACATACAGTTACCTAGTTCCTCTAATTGATAAGCTTAGAGACGCCCAGGAACATTCTCTACATGCTGTGTTGGATCAAAAAGTGACCTCACCACAGAACGTTCTGCTGGTGCTTTGTCCAAATGTGCAACTTTGTGAGCAGGTAGTGAGGATGGCTAACAGTCTCTGTAGAGATGATGGCGAGACAATAGTTAGTGTGGCAGCCATTTGTGGCAAACAGGGATGGCCAATTCGGGAACCTGATGTCATTGTGACGACACCTGCTGCTCTTCTGAATTATGTTGACCTTGACAGAACCCGACGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATTTACTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGCTTTGATGAAAAACTATTGTCTCGATCAAAAAAATCAGTAGCAGAGTTTCCGATGAAACAGGAATTTTCCTTGTCATCAGAAGATGCTTTTGAAGGTGAAGAGGAACTTCAAACTGAAGCCATCTCAGAAGACGATGACAATGATAAAGAGGATATTGTTGATATTAATAATGAAGCCGAAAATGTTAAACTAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCGTAGTAAGCAGTATGTTTTTGTTGCTGCTACACTTCCAGTGAATGGAAAGAAGACAGCTGGAGGGGTATTGAAATATATGTTTCCTGATGCTGAGTGGGTTTGTGGAAACTATCTTCATTGTCACAATCCGAGATTGGAGCAAAAATGGATAGAAGTTATGGCTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGATTCAGATCTGAAGATTTGGTTAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTACTCCGATCTGGGATTGAATGTTCTCGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAAACCTTAGTTGATTTTCATGATAAAGGTGGTGTTCTTGTATGTACCGATGCTGCTGCTCGTGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCGGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACCGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTGGACTGAATCCAACAGGGAGCTTGTTAATGCTGTTCGTCGGGCAGGGGAACTTGATCAACCTGTGGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAAAGGGGTACTAACAAAGTCAGAGATTCAGCAACAATTAAAGAGAGCGTTCTAGGATGA 1740 0.4339 MIVTRSALMLHLQNPPIRYHFFSHFSYAPTFPTLFKPRPFSPTTPRQAQTRTFVSAVASSSSSAHGSNGRDTFFAEENVSWSSLGLSDTISRALSNIGLNRPSLVQASSVPSVLLGKDVIIAAETGSGKTYSYLVPLIDKLRDAQEHSLHAVLDQKVTSPQNVLLVLCPNVQLCEQVVRMANSLCRDDGETIVSVAAICGKQGWPIREPDVIVTTPAALLNYVDLDRTRRMEFMRGVKYVVFDEADLLLCGSFQNKVIRLINLLRFDEKLLSRSKKSVAEFPMKQEFSLSSEDAFEGEEELQTEAISEDDDNDKEDIVDINNEAENVKLRDWRRVRKNYERSKQYVFVAATLPVNGKKTAGGVLKYMFPDAEWVCGNYLHCHNPRLEQKWIEVMADTQVDELIKAVNHRFRSEDLVNAGGIHRTMVFANTVEAVEAVAKILLRSGIECSRYHKNCTLEERAQTLVDFHDKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMWTESNRELVNAVRRAGELDQPVETAFSRKRSFRNKLKKRGTNKVRDSATIKESVLG* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1073 579 Gene3D - 46 367 IPR027417 -
Gso18g1073 579 Pfam Helicase conserved C-terminal domain 422 515 IPR001650 -
Gso18g1073 579 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 563 IPR001650 -
Gso18g1073 579 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 45 551 - -
Gso18g1073 579 Gene3D - 387 579 IPR027417 -
Gso18g1073 579 SMART helicmild6 435 515 IPR001650 -
Gso18g1073 579 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Gso18g1073 579 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 551 - -
Gso18g1073 579 CDD DEADc 90 271 - -
Gso18g1073 579 CDD SF2_C_DEAD 386 523 - -
Gso18g1073 579 Pfam DEAD/DEAH box helicase 105 269 IPR011545 GO:0003676|GO:0005524
Gso18g1073 579 SMART ultradead3 98 389 IPR014001 -
Gso18g1073 579 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 370 IPR014001 -
Gso18g1073 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 527 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1073 Gso-Chr18 18583907 18595200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1073 330 542 Eukaryotic Initiation Factors Gene Family AT5G11200 27.869 3.92e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1073 - - gmx:100789323 1114.75