Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1070 ATGGCAGGAAACATGGGGTGGGGTGTGATAGAAGAGGAGGGATGGAGGAAGGGACCTTGGACTTCTGAGGAGGACAGATTGCTCATTCTGTATGTCAAGTTCCATGGTGAGGGCAGATGGAACTCTGCTGCTAGGCTTGCAGGACTAAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGGCCAGACCTCGAGAAGGGTCAAATAACACCACAAGAAGAAAGCATAATTCTAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTATTGGAGGACTCACTTCAAGAAAAAGATAAGGCCTACAACAAATGATGCACACAAGATTTCATGGTCAAACGTTGAAAGAGAAAACAAAAAGAAGCATAACAAAGATGAGGTAGATGAGAAGGAACAAGAAAAGTTTGGTTTTGTGCTCATGAACTTCAATGAACATCTCCGCCGCTGCCGCGTTCAACCACAACCAGGTTCATCCATTTTTTTCAATTTCAACCAGGATCTTCTCTTCTCCGATGACGACTGTGCCACTAGTGTTCATTTGCCGATAAAGATTTTTGTCGAACATAAAGATGGTTCTCTGTCACCATTGGAGAAAGAGGCACTTCCGTGGAAGGGATTGTAA 681 0.4405 MAGNMGWGVIEEEGWRKGPWTSEEDRLLILYVKFHGEGRWNSAARLAGLKRNGKSCRLRWVNYLRPDLEKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKIRPTTNDAHKISWSNVERENKKKHNKDEVDEKEQEKFGFVLMNFNEHLRRCRVQPQPGSSIFFNFNQDLLFSDDDCATSVHLPIKIFVEHKDGSLSPLEKEALPWKGL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1070 226 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gso18g1070 226 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Gso18g1070 226 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gso18g1070 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Gso18g1070 226 CDD SANT 19 64 IPR001005 -
Gso18g1070 226 Gene3D - 17 69 - -
Gso18g1070 226 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Gso18g1070 226 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 152 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso18g1070 226 Gene3D - 74 119 - -
Gso18g1070 226 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Gso18g1070 226 SMART sant 69 117 IPR001005 -
Gso18g1070 226 SMART sant 16 66 IPR001005 -
Gso18g1070 226 CDD SANT 74 115 IPR001005 -
Gso18g1070 226 PANTHER MYB TRANSCRIPTION FACTOR 1 152 - -
Gso18g1070 226 Coils Coil 133 153 - -
Gso18g1070 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1070 Gso-Chr18 18482454 18487595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1070 12 142 MYB Transcription Factor Family AT4G13480 79.389 3.18e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g1070 Myb_DNA-binding 6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1070 K09422 - gmx:100782089 261.151