Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1066 ATGGACTCTAACAGCGTCGTTTCTTGGCCGAGGATGCCAGAAAACATCAACGGTTTCGGCCTCAAACAGAACCAATCCGAAGAGGTTCATGTTTTAGCCGTTGATGACAGCACCGTTGATCGCAAAGTCATCGAACACTTGCTCAAAGTCTTAGCCTGTAAAGTTACTGCTGTGGATAGTGGGCTGAGAGCACTGCAATTGCTTGGACTATTGGACGAGCAGAAAATACCCTCTGAAACTAATGGTTTTGTGGGTTTGAAGGTAGATCTAATCATCACAGACTATTGTATGCCCGGAATGACCGGTTATGAATTACTCAAGAGAATCAAGGAATCATCTACTTTCAAGGAAACGCCTGTGGTTATTATGTCATCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAGGAGGGTGCAGAGGATTTCATAGTGAAGCCAGTGAAGTTATCTGATGTGAAGCGTTTGAAGGATTACATGACAACAAAGGAGGTTAGGGGTGAATTAAGCCAAGAAGAGAGGGAAGGGATCAACAAGAGGAAGCTATTGGACACCTCTGATGTGTCGCCATCATCACCACCGTCCATTTCCTCATCACCACTTCCATCTTCACTCAGCTCAGTGATTGACTCTCCAATCAGACGGCTTAAAATGACCAACACTGATTGA 669 0.4469 MDSNSVVSWPRMPENINGFGLKQNQSEEVHVLAVDDSTVDRKVIEHLLKVLACKVTAVDSGLRALQLLGLLDEQKIPSETNGFVGLKVDLIITDYCMPGMTGYELLKRIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEVRGELSQEEREGINKRKLLDTSDVSPSSPPSISSSPLPSSLSSVIDSPIRRLKMTNTD* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1066 222 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 10 210 - -
Gso18g1066 222 MobiDBLite consensus disorder prediction 167 222 - -
Gso18g1066 222 CDD REC_typeA_ARR 31 156 - -
Gso18g1066 222 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 210 IPR045279 GO:0009736
Gso18g1066 222 Gene3D - 29 196 - -
Gso18g1066 222 SUPERFAMILY CheY-like 29 156 IPR011006 -
Gso18g1066 222 Pfam Response regulator receiver domain 31 153 IPR001789 GO:0000160
Gso18g1066 222 ProSiteProfiles Response regulatory domain profile. 30 161 IPR001789 GO:0000160
Gso18g1066 222 SMART REC_2 29 160 IPR001789 GO:0000160
Gso18g1066 222 MobiDBLite consensus disorder prediction 184 222 - -
Gso18g1066 222 MobiDBLite consensus disorder prediction 167 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1066 Gso-Chr18 18265558 18266907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1066 1 214 Response Regulator Gene Family AT1G59940 54.622 9.51e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso18g1066 Response_reg 5.4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1066 K14492 - gmx:100527828 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0323 1 3995156 3996512 Gso18g1066 18 18265558 18266907 PCT
Gso2g0231 2 2440784 2442209 Gso18g1066 18 18265558 18266907 PCT
Gso18g1066 18 18265558 18266907 Gso1g0323 1 3995156 3996512 PCT
Gso18g1066 18 18265558 18266907 Gso2g0231 2 2440784 2442209 PCT