Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1060 ATGAAGAGGACAAGGGATGATGTTTACATGAGTTCACAACTCAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGACGAGTGGCGGTGGTCAGAAACTAACCACAAATGATGCCTTGGCATATCTCAGGGCAGTAAAGGACATTTTTCAAGATAAGAGGGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACATCAGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCTCCCCAAAAGAAGCCCGTTGAATTTGCAGAAGCCATAAATTTTGTGGGAAAGATTAAGGCTCGTTTTTATGCCAATGACCGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAATGGAAGCCAAGTCTATCGCTGAGGTTTACAAGGAGGTTGCTGCACTTTTCCAGGACCATGTGGATCTTCTTAGGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAACAGCCAACAATTCTCTCCTTCACGATAGGACAACAATTAGGCAAATGCATGTTGAAAAGAAAGAAAGGAACATAGCTTCACATGGTGATCATGATCTCGGTGCTGACCATCCTGATCCAGAACTTGACAGATGTTTGATTAGGGCTGATAAGGATCAGAGGAGGCGTGATGAGAAGGAAAAGGACAGTAGAGATTATGATCATGATGGTATATCTCACAAGCGGAAATCTGGTTGTAGGGCTGAAGACTCTGGAGCTGAACCATTGCATGATACTGATGAAAATTTTGGCATGCACCGTATTTCATATGCTTGTGAGGACAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGCTTGGTTACCTTGACAAAGTGAAGGATAAATTACGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTAAATATCTACAGCAAGGAAATAATTGCCCGACACGAGTTGCAATCATTGGTGGGCAATTTACTGGGAAAACATGCAGATCTTATGGAGGGATTTGATGAATTTTTGGCTCAATGTGAGAAGAATGAAGGATTCCTTGCTGGTCTCCTGAAAAAAAGACACGGACCAAAACCAGTGAAGGTAGAGGACAGGGATCAAGATCGTGATAGGGATGACGGGATGAAAGAAAGGGATCGTGAATGCCGAGAAAGGGACAAAGCAACTGCTAACAAGGATGTTTCAGTTCCTAAGACGTCTCTATATACCAGCAAGGATAAGTATGCAGCGAAACCTATAAGTGAGCTGGATCTTTCTAACTGTGAACAATGCACTCCCAGTTACCGTCTTCTACCGAAAAATTACCCAATACCACCAGCTAGCCAGAGAACAGAACTTGGTGCAGAGGTGTTGAATGATCACTGGGTTTCTGTTACTTCTGGCAGTGAGGACTATTCCTTTAAGCACATGCGCAAAAATCAGTATGAGGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAAGAGCTCTTAGAAAAGGTTAATGCTAATATAATTAAAGGAGACAGTCCAATTTGTATCGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATTGAACGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCCTCTTTAGCTTTGCCAGTCATATTAACTCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAATTATCACAAATCACTTGATCACCGTAGTTTCTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGTCTTACTGGCAGAAATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCTTTTATTCCTCACTTGGAATTTGTGTATCCTGATCCAGAGATTCATGAAGATCTGTATCAACTCATAAAATATTCATGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGCTAATAAGAATAATTCTAGCAAAAGTGGCACTGCAATTGATGATGGTGATAGTAGTCCTGTAACAAATCCTAAGAATTTAAACACTAAAAGAAATGAGGATGAGAACTTTCCATCAGAGCAAATAAATTCCTGCAAACAATGGCAAACAAATGGGGATAATAAGGTTAAAGAAGATAATTATCTTGATTCAGAATGCCCGGCACATAAGATTGAAACCTTGGGAAGTATTACACAGCAGGATAAAGTGCATATAAATGCATCCATGCCTGATGAAGTATCAAGAGCCAATAAGCAAGATCATTCCATTGAACGGTTGGTGAATGGTAATGTCTCACCATCCTCGGGTATGGAGCAAATTAGTAGAATAACAAATGTGGATAATGCATCAGGACTTGCTGCTACTCCATCAAGACCTGGTAATATTTCTGGTGCGGGAGGACTTGGTTTACCTTCATTAGAGGGTGCTGATTCTACGAGACCAGTTACATCCACAAATGGGGCCATCATTGAGGACACTAAAGTTCACAGATATCGCGAAGACGCTGGACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACTTTGAAGAGGATGAGTTTGCAGTTTATGGACATGCTGGTTTGGAGGCAGTTCATAAAGGAAAAAATGGTACCATTTGTCGACAATACCAAAATAGACATGGGGAAGAAGTTCGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGATGAAGGTGAAGAAAGTCCCCATAGATCAATGGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCTGGTACGGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAACATGAGGAGGATGGAGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCAGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGATGGTGCCTCATTGCCATATTCAGAGTGCTTTCTTGTCACTGTAAAGCCTCTGGCAAAACATGTTCCTCCTGTGTTGCATGACAAAGAAAGGACTGCTCGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATCCAATCTGCAAAGGTTAACTCATCATCTGCTGAAAAGAAGTGGAGGGCTTCAAATGATACAGGCTCTAGTGATCAATATGGCAGGTTTATGGATGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCACTGAAGAGATAGATAACAAGCTGCTTCAACTATATGCATATGAAAATTCAAGAAAACCTGGAAGATTTGTTGATTTAGTTTATCACGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATGTTCTCCTGCACCTACCCAATTGTCATCTATTCAACTGATGGACTATGGATATGATAAGCCTGAATTGACTGCTGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTATCTGTTGTCCCTGACAAAATGGAGAAGTCTGGAATTTACCTGAAGAGGAATAAGCGCAAGTATGCTATTAGTGATGAATATTCAAGCCAGACCTTGGATGGACTAGAAATTATCAATGGTCTAGAGTGTAAGATAGTTTGCAATTCATCCAAGGTTTCATACGTTTTAGATACTGAAGACTTTTTACATCGAACAAGAAGAAAAAGGAGAACCTTGCATCAGAGCAGTTCATGCCATGAACAGGCAAAGTCCTCAATCATTTGTTCAAGCAGAGCACAACGGTTCTGCAAATTATTTTCAATTTGA 4146 0.4033 MKRTRDDVYMSSQLKRPMVSSRGEPSGQPQMTSGGGQKLTTNDALAYLRAVKDIFQDKREKYDDFLEVMKDFKAQRIDTSGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAINFVGKIKARFYANDRVYKSFLDILNMYRMEAKSIAEVYKEVAALFQDHVDLLREFTHFLPDTSGTANNSLLHDRTTIRQMHVEKKERNIASHGDHDLGADHPDPELDRCLIRADKDQRRRDEKEKDSRDYDHDGISHKRKSGCRAEDSGAEPLHDTDENFGMHRISYACEDKSSLKSMYSPVLGYLDKVKDKLRNPEDYQEFLKCLNIYSKEIIARHELQSLVGNLLGKHADLMEGFDEFLAQCEKNEGFLAGLLKKRHGPKPVKVEDRDQDRDRDDGMKERDRECRERDKATANKDVSVPKTSLYTSKDKYAAKPISELDLSNCEQCTPSYRLLPKNYPIPPASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKVNANIIKGDSPICIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPFIPHLEFVYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPMLGVPSRPQGPEDTEDVVKANKNNSSKSGTAIDDGDSSPVTNPKNLNTKRNEDENFPSEQINSCKQWQTNGDNKVKEDNYLDSECPAHKIETLGSITQQDKVHINASMPDEVSRANKQDHSIERLVNGNVSPSSGMEQISRITNVDNASGLAATPSRPGNISGAGGLGLPSLEGADSTRPVTSTNGAIIEDTKVHRYREDAGPFKSEREEGELSPNGDFEEDEFAVYGHAGLEAVHKGKNGTICRQYQNRHGEEVRGEAGGENDADDEGEESPHRSMEDSENASENGDVSGTESADGEECSREHEEDGDHEHDNKAESEGEAEGMADANDVEGDGASLPYSECFLVTVKPLAKHVPPVLHDKERTARVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAEKKWRASNDTGSSDQYGRFMDALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATEEIDNKLLQLYAYENSRKPGRFVDLVYHENARVLLHDENIYRIECSPAPTQLSSIQLMDYGYDKPELTAVSMDPNFSAYLHNDFLSVVPDKMEKSGIYLKRNKRKYAISDEYSSQTLDGLEIINGLECKIVCNSSKVSYVLDTEDFLHRTRRKRRTLHQSSSCHEQAKSSIICSSRAQRFCKLFSI* 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1060 1381 Pfam Sin3 family co-repressor 457 547 IPR013194 -
Gso18g1060 1381 Coils Coil 524 544 - -
Gso18g1060 1381 MobiDBLite consensus disorder prediction 747 772 - -
Gso18g1060 1381 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Gso18g1060 1381 MobiDBLite consensus disorder prediction 1 38 - -
Gso18g1060 1381 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Gso18g1060 1381 MobiDBLite consensus disorder prediction 1021 1048 - -
Gso18g1060 1381 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Gso18g1060 1381 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Gso18g1060 1381 SMART hdac_interact2seq4b 455 555 IPR013194 -
Gso18g1060 1381 MobiDBLite consensus disorder prediction 392 431 - -
Gso18g1060 1381 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Gso18g1060 1381 Pfam Paired amphipathic helix repeat 328 372 IPR003822 GO:0006355
Gso18g1060 1381 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Gso18g1060 1381 PANTHER SIN3B-RELATED 1 1359 IPR039774 GO:0003714
Gso18g1060 1381 MobiDBLite consensus disorder prediction 978 1059 - -
Gso18g1060 1381 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Gso18g1060 1381 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Gso18g1060 1381 MobiDBLite consensus disorder prediction 994 1008 - -
Gso18g1060 1381 Gene3D Paired amphipathic helix 305 377 IPR036600 GO:0006355
Gso18g1060 1381 ProSiteProfiles PAH domain profile. 306 375 IPR003822 GO:0006355
Gso18g1060 1381 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1359 - -
Gso18g1060 1381 MobiDBLite consensus disorder prediction 392 427 - -
Gso18g1060 1381 MobiDBLite consensus disorder prediction 727 796 - -
Gso18g1060 1381 MobiDBLite consensus disorder prediction 220 288 - -
Gso18g1060 1381 Pfam C-terminal domain of Sin3a protein 1095 1342 IPR031693 -
Gso18g1060 1381 MobiDBLite consensus disorder prediction 14 38 - -
Gso18g1060 1381 SUPERFAMILY PAH2 domain 310 375 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1060 Gso-Chr18 18130992 18142519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1060 28 119 WRKY Transcription Factor Family AT4G12020 60.638 1.97e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso18g1060 Sin3a_C 1.3e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1060 K11644 - gmx:100813398 2717.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0329 1 4054316 4066655 Gso18g1060 18 18130992 18142519 PCT
Gso2g0225 2 2374272 2386644 Gso18g1060 18 18130992 18142519 PCT
Gso18g1060 18 18130992 18142519 Gso1g0329 1 4054316 4066655 PCT
Gso18g1060 18 18130992 18142519 Gso2g0225 2 2374272 2386644 PCT