Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1046 ATGTGTTCCGCAGAGAAGGACGGGATCATGCTCTTCGGCGTGCGCCTCACCGTATCGGATAATAACCCTACAACCTTAAGGAAGAGCGCCAGCATGAACAATCTCTCCCAATACGACTCTCAACCACCGCACGATCCCAACGCAGGGTACGCCTCAGACGATGTCGTTCATCCCTCCCGTCACACCCGAGAACGCAAACGAGGTGTTCCGTGGACGGAGGAAGAACACAGGTTGTTCCTGTTGGGATTACAGAACGTTGGAAAAGGAAATTGGAGAGGAATTTCTAGAAACTTCGTGATGACTCGAACCCCGACACAGGTTGCTAGTCATGCTCAGAAGTACTTCCTCCGCTGCCACAGGCAGAACCGCCGCCGCCGGAGATCTAGTCTCTTCGACATCACCACCAACTCGGTGATGGAACCGTGGCCGGAGAAGGAAGAGGAACAAGCGGCGGCGCCATCTACTAGGTTGAAACCGGTTCTGCCGGTGCCTCAGTCGTCGAAGATGGCAGAGTTGGACTTGAATGGGAAGTCGCTGTCGCTGAAGCTTTCGGTATCCAAGCCACCTATTTCTAATGAGAATTTTGGCGGTGGTGGGGATAGCATTAGCAGTGTTGCTTGA 621 0.5362 MCSAEKDGIMLFGVRLTVSDNNPTTLRKSASMNNLSQYDSQPPHDPNAGYASDDVVHPSRHTRERKRGVPWTEEEHRLFLLGLQNVGKGNWRGISRNFVMTRTPTQVASHAQKYFLRCHRQNRRRRRSSLFDITTNSVMEPWPEKEEEQAAAPSTRLKPVLPVPQSSKMAELDLNGKSLSLKLSVSKPPISNENFGGGGDSISSVA* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1046 206 ProSiteProfiles SANT domain profile. 66 119 IPR017884 -
Gso18g1046 206 SUPERFAMILY Homeodomain-like 65 118 IPR009057 -
Gso18g1046 206 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Gso18g1046 206 PANTHER TRANSCRIPTION FACTOR KUA1 2 155 - -
Gso18g1046 206 ProSiteProfiles Myb-like domain profile. 63 115 IPR001005 -
Gso18g1046 206 CDD SANT 70 115 IPR001005 -
Gso18g1046 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 119 IPR017930 -
Gso18g1046 206 Gene3D - 69 120 - -
Gso18g1046 206 SMART sant 67 117 IPR001005 -
Gso18g1046 206 MobiDBLite consensus disorder prediction 141 164 - -
Gso18g1046 206 MobiDBLite consensus disorder prediction 186 206 - -
Gso18g1046 206 MobiDBLite consensus disorder prediction 34 68 - -
Gso18g1046 206 PANTHER TRANSCRIPTION FACTOR KUA1 2 155 - -
Gso18g1046 206 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 66 117 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1046 Gso-Chr18 17732634 17735714 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso18g1046 Myb_DNA-binding 1.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1046 - - gmx:100775434 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0332 1 4138215 4140590 Gso18g1046 18 17732634 17735714 PCT
Gso2g0221 2 2326540 2328863 Gso18g1046 18 17732634 17735714 PCT
Gso18g1046 18 17732634 17735714 Gso1g0332 1 4138215 4140590 PCT
Gso18g1046 18 17732634 17735714 Gso2g0221 2 2326540 2328863 PCT