Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1044 ATGCCGTCTCACGCGGATCTGGAGCGACAGATCGAGCAGCTGATGGACTGCAAGCCTCTGTCGGAGTCGGAGGTGAAGGCGCTGTGCGATCAAGCGAGGTCGATTCTTGTGGAGGAGTGGAACGTGCAACCGGTTAAGTGCCCCGTCACCGTCTGCGGCGATATTCACGGCCAGTTCTACGATCTCATCGAGCTGTTTCGTATTGGAGGGAACGCTCCCGATACCAATTATCTCTTCATGGGTGATTATGTAGATCGTGGATACTATTCAGTGGAGACTGTTACACTTTTGGTGGCTTTGAAAGTCCGTTATAGAGATAGAATCACAATTCTCAGGGGAAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGCTTCTATGATGAATGCTTGAGAAAATATGGAAATGCGAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTGCCTCTGACTGCCCTCATTGAGAGTCAGATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAACATCAGAGCATTGGATCGTATTCAAGAGGTTCCACATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCTGATGATCGCTGTGGATGGGGAATATCTCCACGTGGTGCAGGATACACATTTGGGCAGGATATAGCTGCTCAGTTTAATCATACCAATGGCCTCTCCCTGATATCGAGAGCACATCAGCTTGTTATGGAAGGATTCAATTGGTGCCAGGACAAGAATGTGGTGACTGTATTTAGTGCTCCAAATTACTGTTATCGATGTGGGAATATGGCTGCCATACTAGAAATAGGAGAGAATATGGATCAGAATTTTCTTCAGTTTGATCCAGCTCCCAGGCAAATTGAGCCTGACACCACACGCAAGACTCCAGATTATTTTTTGTAA 921 0.4582 MPSHADLERQIEQLMDCKPLSESEVKALCDQARSILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1044 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 306 - -
Gso18g1044 306 SMART pp2a_7 20 290 IPR006186 GO:0016787
Gso18g1044 306 Pfam Calcineurin-like phosphoesterase 48 239 IPR004843 GO:0016787
Gso18g1044 306 CDD MPP_PP2A_PP4_PP6 6 290 - -
Gso18g1044 306 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Gso18g1044 306 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Gso18g1044 306 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Gso18g1044 306 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Gso18g1044 306 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Gso18g1044 306 PRINTS Serine/threonine phosphatase family signature 230 250 IPR006186 GO:0016787
Gso18g1044 306 PRINTS Serine/threonine phosphatase family signature 252 268 IPR006186 GO:0016787
Gso18g1044 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 306 - -
Gso18g1044 306 Gene3D - 2 306 IPR029052 -
Gso18g1044 306 SUPERFAMILY Metallo-dependent phosphatases 6 293 IPR029052 -
Gso18g1044 306 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1044 Gso-Chr18 17671470 17677143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1044 49 225 Calmodulin-binding Proteins AT5G63870 36.449 1.61e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1044 K04382 - gmx:100812326 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0334 1 4170911 4175193 Gso18g1044 18 17671470 17677143 PCT
Gso2g0218 2 2299419 2303420 Gso18g1044 18 17671470 17677143 PCT
Gso18g1044 18 17671470 17677143 Gso1g0334 1 4170911 4175193 PCT
Gso18g1044 18 17671470 17677143 Gso2g0218 2 2299419 2303420 PCT