Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1030 ATGGGTGCAGGAGATTACTACAAGATCCTCAAGATGAACCGCAATGCCACGGATGAAGAACTCAAGAGGGCATATAAGAGGTTGGCCATGAAGTGGCACCCAGATAAGAACCATCCACACCACCATCAACATGTTACGAAAGAAGAAGCTGAGGCAAAGTTCAAGCAGGTTTCGGAGGCTTATGATGTTCTCAGTGACCCCAAGAAGCGCCAGATCTATGATTTCTATGGTCACTATCCCCTGAACTCCATGAAGGTGAATGAGGAGAATGGTGATGGGGATGTTAATAGGGTCCCCAAGGGGGTGAAAAATGTTGGGGTGGTTGAGAGCAAATTGGTGTGCACCCTTGAGGAGCTTTACAAAGGTTGCAAGAAGAAGTTGAAGATCTCGAAGACTATTCCTCATGAATTCGGAAAGACGAAGACTGTGGAAGAGGTCTTGAAAATATATATCAAACCTGGTTGGAAGAAAGGCACAAAAATAACATTTCCTGGGAAAGGCAACCAAGAAGCAGAAGCTACTGCTCCTGACGATCTAATCTTTGTGGTTGATGAAAAACCACATGCTTTGTTCAAGAGAGATGGAAATGATTTGGTTGTCACACAGAAAATCCTACTTGTGGAAGCTCTAGTGGGAAAGACTCTCAATTTAACCACTTTGGATGGAAGAGAGCTCACAATTCAAGTCACAGAAGTTGTGAAACCAAAATATGTGTTGGTGGTCCCAAATGAAGGAATGCCAATTTCAAAGGAACCTGGCAAGAAAGGAAACTTGAGAATCAAGTTTGATGTTATGTTCCCATCAAGGCTCACCTCACAACAGAAGTATGAACTGAAAAGGATTTTGAGCAACAGTACTGCTGATGACTAA 870 0.431 MGAGDYYKILKMNRNATDEELKRAYKRLAMKWHPDKNHPHHHQHVTKEEAEAKFKQVSEAYDVLSDPKKRQIYDFYGHYPLNSMKVNEENGDGDVNRVPKGVKNVGVVESKLVCTLEELYKGCKKKLKISKTIPHEFGKTKTVEEVLKIYIKPGWKKGTKITFPGKGNQEAEATAPDDLIFVVDEKPHALFKRDGNDLVVTQKILLVEALVGKTLNLTTLDGRELTIQVTEVVKPKYVLVVPNEGMPISKEPGKKGNLRIKFDVMFPSRLTSQQKYELKRILSNSTADD* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1030 289 CDD DnaJ 5 66 IPR001623 -
Gso18g1030 289 Gene3D - 106 186 - -
Gso18g1030 289 Gene3D - 188 268 - -
Gso18g1030 289 Gene3D DnaJ domain 2 96 IPR036869 -
Gso18g1030 289 PRINTS DnaJ domain signature 7 25 IPR001623 -
Gso18g1030 289 PRINTS DnaJ domain signature 25 40 IPR001623 -
Gso18g1030 289 PRINTS DnaJ domain signature 49 69 IPR001623 -
Gso18g1030 289 PRINTS DnaJ domain signature 69 88 IPR001623 -
Gso18g1030 289 Pfam DnaJ C terminal domain 108 267 IPR002939 -
Gso18g1030 289 CDD DnaJ_C 108 270 - -
Gso18g1030 289 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Gso18g1030 289 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 284 - -
Gso18g1030 289 SUPERFAMILY HSP40/DnaJ peptide-binding domain 110 188 IPR008971 GO:0006457|GO:0051082
Gso18g1030 289 SUPERFAMILY Chaperone J-domain 4 83 IPR036869 -
Gso18g1030 289 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 284 - -
Gso18g1030 289 ProSiteProfiles dnaJ domain profile. 5 77 IPR001623 -
Gso18g1030 289 SUPERFAMILY HSP40/DnaJ peptide-binding domain 191 275 IPR008971 GO:0006457|GO:0051082
Gso18g1030 289 SMART dnaj_3 4 69 IPR001623 -
Gso18g1030 289 Pfam DnaJ domain 5 74 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1030 Gso-Chr18 17091327 17094070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1030 6 74 C2H2 Transcription Factor Family AT1G74250 37.681 2.53e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1030 K09510 - gmx:100810718 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2319 7 46778164 46781894 Gso18g1030 18 17091327 17094070 GST