Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1024 ATGGCTGGTCAGAAGCTTCATGGGGGTTCAAGCATGACACTTTTGCTCCAAAAAGAAAGACTTCCATGCTCCCCTGAACTTATTCAATCTTTTTGTTTTCAAAACTCTGAACCTTCTTTCCAAGGTTCAAAATCCATGGCTAATGTTGTGAACGTCACGCATAGGCCCTTCTTTCAAGGGCCAGAGAAAGAAGAGAACGGCAATGATGCGGATTTTGAGGTGTGCCTCCATCAACCCGGTAAGACAAGGAGGCTCACAAGTGAACAAGTGCAGTTTCTTCAAAGTAACTTCGAGGTGGAAAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAGGAACTTGGCATGCAACCACGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTTGAGACAGACTATGGCATGTTAAAAGCTAGCTATCACGTACTCAAACGGGACTATGACAATCTCCTTCAAGAGAATGACAAGTTAAAGGAAGAGGTTAACTCTCTCAACAGACTGATTCCCAGAGAGCAAGAGGAACAGAATTCTGATGATACCTCTTGTGATACTGTCAACTCACGGCATAAAGAGCATAAAGAGCATAAAGATTTAATCATAAACACAGGTTCTGAGAATGGATCCGAAGTGCCACTTCCTGTTAAGGTAATAAACAAACATGAAGATGCTAATTCAGCTAAAAGTGATGTTCTTGATTCGGAGAGCCGACATTTCACTGATGGAAACCAATCCTCATATATGGAGCCTGCAGATTCCTCCCATGCTTTGGAACCAGACCACTCAGATTTCTCGCAAGATGAAGAAGACATCCTCAGCCAAAACATCTTGACCATGCCGTTCTTACCAAAGGTTGAAGATGTCTGCTATGAATATGATGAACCAAATGAAAATTCTTGCAGTTTCCGGTTCCCACTTGAAGATCAAGCCTTCTGCTTTTGGTCATATTGA 975 0.4297 MAGQKLHGGSSMTLLLQKERLPCSPELIQSFCFQNSEPSFQGSKSMANVVNVTHRPFFQGPEKEENGNDADFEVCLHQPGKTRRLTSEQVQFLQSNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLETDYGMLKASYHVLKRDYDNLLQENDKLKEEVNSLNRLIPREQEEQNSDDTSCDTVNSRHKEHKEHKDLIINTGSENGSEVPLPVKVINKHEDANSAKSDVLDSESRHFTDGNQSSYMEPADSSHALEPDHSDFSQDEEDILSQNILTMPFLPKVEDVCYEYDEPNENSCSFRFPLEDQAFCFWSY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1024 324 CDD homeodomain 79 137 IPR001356 GO:0003677
Gso18g1024 324 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Gso18g1024 324 SUPERFAMILY Homeodomain-like 80 147 IPR009057 -
Gso18g1024 324 Coils Coil 149 183 - -
Gso18g1024 324 SMART HOX_1 79 140 IPR001356 GO:0003677
Gso18g1024 324 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Gso18g1024 324 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Gso18g1024 324 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 324 - -
Gso18g1024 324 MobiDBLite consensus disorder prediction 175 209 - -
Gso18g1024 324 Pfam Homeobox associated leucine zipper 136 175 IPR003106 GO:0006355|GO:0043565
Gso18g1024 324 MobiDBLite consensus disorder prediction 175 219 - -
Gso18g1024 324 Pfam Homeodomain 83 134 IPR001356 GO:0003677
Gso18g1024 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 324 IPR045224 GO:0003700
Gso18g1024 324 MobiDBLite consensus disorder prediction 232 275 - -
Gso18g1024 324 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Gso18g1024 324 Gene3D - 75 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1024 Gso-Chr18 16762515 16765066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1024 31 185 Homeobox Transcription Factor Family AT3G01470 51.266 3.12e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso18g1024 Homeodomain 6.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1024 - K09338 gmx:100804328 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0385 1 4926355 4929150 Gso18g1024 18 16762515 16765066 PCT