Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1021 ATGGGGTTGGGTGGTGCTGAGAATGGAAAGGTGGTGGTGGAGTCTTTGGATGTGTGTAAATCAAAGGGGAGGAAGAAGAAGAAGAAAGAGGATGGGGAAGTTGAAGAGAAGGAAGAGACTGGGTGTTGGTTCAGGCTGAGGTTCATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCAGTTAGTGGCACCAGCACTAATTATGCTGAAAGTAAATCAACTATTGATACAAGTAGAGATCAACCAACAGTCCCAGTAGTCTCTTCAACAACCACTAGTAATGCTGAAAGCAATTCATCCACTTCCAAACTTGAAGAGGAGTTTAAAGTTTCTTCCAGGCTGCGAAAATTCACGTTCAATGATCTTAAATTAGCAACGAGAAATTTTCGGCCTGAAAGTCTTCTTGGTGAAGGTGGCTTTGGTTGTGTGTTCAAGGGATGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACGGGGCTTACTGTTGCTGTAAAAACCCTCAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAGGTAAATTATCTTGGTGATCTAGTTCATCCACACCTCGTTAAACTTATTGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTATATGAATTTATGCCTCGGGGAAGCCTGGAAAATCACTTGTTTAGGAGGTCCCTACCTCTTCCATGGTCCATTAGGATGAAAATTGCACTAGGAGCTGCAAAGGGTCTTGCTTTTCTTCACGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAGAATACAATGCTAAGCTCTCAGACTTTGGACTTGCAAAAGATGGTCCAGAGGGTGATAAAACTCATGTGTCTACTCGAGTGATGGGAACCTATGGTTATGCAGCACCAGAATATGTCATGACGGGACATCTTACATCAAGAAGTGATGTGTATAGTTTCGGAGTGGTACTACTTGAGATGTTGACTGGCAGAAGATCTATGGACAAAAACCGACCCAACGGTGAACACAACCTTGTGGAATGGGCTAGACCACATCTGGGAGAGAGAAGAAGGTTCTACAGATTGATAGACCCACGCTTGGAAGGCCACTTTTCCATAAAAGGGGCTCAGAAAGCCGCGCATCTGGCTGCTCACTGCCTTAGCAGAGATCCAAAAGCACGACCCTTGATGAGCGAGGTCGTGGAAGCTTTAAAGCCTCTGCCAAACCTCAAGGACATGGCTAGTTCATCGTATTATTTTCAGACAATGCAAGCCGACCGGTTTAGCGCAAGTCCAAATACCAGAAACGGGAGAACACAAGGAGCATTGCTCACCAGAAATGGGCAACAGCAAAGGAGCCTATCAATTCCACATGGCACGCATGCATCTCCATATCACCATCAGTTTCCACAACCATCACCAAAACCCAATGGCAAGGCATAG 1464 0.4495 MGLGGAENGKVVVESLDVCKSKGRKKKKKEDGEVEEKEETGCWFRLRFIGSCISSRSKVDSSVSGTSTNYAESKSTIDTSRDQPTVPVVSSTTTSNAESNSSTSKLEEEFKVSSRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHPHLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAHLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRNGRTQGALLTRNGQQQRSLSIPHGTHASPYHHQFPQPSPKPNGKA* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1021 487 MobiDBLite consensus disorder prediction 57 104 - -
Gso18g1021 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Gso18g1021 487 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524
Gso18g1021 487 Pfam Protein tyrosine and serine/threonine kinase 135 411 IPR001245 GO:0004672|GO:0006468
Gso18g1021 487 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 62 477 - -
Gso18g1021 487 Gene3D Phosphorylase Kinase; domain 1 105 216 - -
Gso18g1021 487 PANTHER OS01G0588500 PROTEIN-RELATED 62 477 - -
Gso18g1021 487 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1021 487 CDD STKc_IRAK 137 414 - -
Gso18g1021 487 MobiDBLite consensus disorder prediction 57 103 - -
Gso18g1021 487 MobiDBLite consensus disorder prediction 453 487 - -
Gso18g1021 487 MobiDBLite consensus disorder prediction 19 38 - -
Gso18g1021 487 Gene3D Transferase(Phosphotransferase) domain 1 217 433 - -
Gso18g1021 487 SUPERFAMILY Protein kinase-like (PK-like) 106 411 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1021 Gso-Chr18 16486376 16490390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1021 78 411 Glycoside Hydrolase AT3G07070 54.142 1.19e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso18g1021 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1021 - - gmx:100807510 921.383