Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1017 ATGGAGCTTGCACCTGTGAAGTCTGAACTAAGTCCAAGGAGCCATAGGTTGGTCATTATAGATGGTAGTGATGTTATTAGCACGAAGTGTGCCAAAAGGCGGCGAAGAGATTCGTCTATGGCCGTGTTAGGTGGCAATGGACAACAAGGTGAACAGTTAGAAGAACAGAAGCAACTTTGTGGCCAATCAACTGCCACCACTGTGAAGAGAAGCTCAAGGTTCAGGGGAGTTAGCAGACACAGGTGGACTGGAAGGTTTGAAGCACATCTATGGGATAAAGGGACCTGGAATCCCACTCAGAAGAAGAAAGGAAAGCAAGTATATTTGGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTCCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCATTGAGGAGGAGGAGCAGCGGTTTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGGATTGGGAGAGTGTTCGGCAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAAGCAGCCCGTGCATATGACATTGCAGCAATTGAATACAGAGGCATAAATGCAGTGACAAATTTTGACTTGAGCACCTACATCAGATGGCTAAGACCAGGAACACATCCTACTGCTTCTCATGATCAAAAGCCTAGCACTGATGCTCAACTTTTTGCAACCTCTAACTCCATGCAAACAAGAGGGAACATTGAGGTATCCAACTCCAACATGCATTCATTCCCCTCAGGTGAATTGGACAGTACCAAGAAGCGAGACTTTTCCAAGTACATGAACCCTTTGAGTCCTTGCAACAAGCCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCCTCGGTGTTTAGAGAACTGATGCAGAGAAATCTGAACTCTTCTAGTGAAGAAGCTGATGTTGAATTGAAATATCCACAAGAGGGAAATGATGGGGTTGGAGGGATTTATGATAATGACAACACCAGTAACTCTTACTTTTGCTCTTCTAATATCAGCAGATTACCTAACTTGGAGTCATCAGAAGAGTGTCCATTGCCTATGTATCATGGAACTATGCAATCACTATGGAATAGTGCTTTCAACATGTCTAACTGA 1221 0.43 MELAPVKSELSPRSHRLVIIDGSDVISTKCAKRRRRDSSMAVLGGNGQQGEQLEEQKQLCGQSTATTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTHPTASHDQKPSTDAQLFATSNSMQTRGNIEVSNSNMHSFPSGELDSTKKRDFSKYMNPLSPCNKPSSPTALGLLLKSSVFRELMQRNLNSSSEEADVELKYPQEGNDGVGGIYDNDNTSNSYFCSSNISRLPNLESSEECPLPMYHGTMQSLWNSAFNMSN* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1017 406 Gene3D AP2/ERF domain 174 235 IPR036955 GO:0003700|GO:0006355
Gso18g1017 406 Gene3D AP2/ERF domain 72 141 IPR036955 GO:0003700|GO:0006355
Gso18g1017 406 ProSiteProfiles AP2/ERF domain profile. 175 233 IPR001471 GO:0003700|GO:0006355
Gso18g1017 406 SMART rav1_2 175 239 IPR001471 GO:0003700|GO:0006355
Gso18g1017 406 SMART rav1_2 73 145 IPR001471 GO:0003700|GO:0006355
Gso18g1017 406 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Gso18g1017 406 PRINTS Ethylene responsive element binding protein signature 215 235 IPR001471 GO:0003700|GO:0006355
Gso18g1017 406 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 400 - -
Gso18g1017 406 SUPERFAMILY DNA-binding domain 174 235 IPR016177 GO:0003677
Gso18g1017 406 SUPERFAMILY DNA-binding domain 72 141 IPR016177 GO:0003677
Gso18g1017 406 Pfam AP2 domain 72 131 IPR001471 GO:0003700|GO:0006355
Gso18g1017 406 Pfam AP2 domain 174 225 IPR001471 GO:0003700|GO:0006355
Gso18g1017 406 CDD AP2 174 235 IPR001471 GO:0003700|GO:0006355
Gso18g1017 406 ProSiteProfiles AP2/ERF domain profile. 73 139 IPR001471 GO:0003700|GO:0006355
Gso18g1017 406 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1017 Gso-Chr18 16379506 16382309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1017 69 237 AP2-EREBP Transcription Factor Family AT5G57390 69.822 1.48e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso18g1017 AP2 5.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1017 - - gmx:100798483 793.497