Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1015 ATGTCGAATTTGCAGTTACAGATTCACTCTCCTACACCATCACTCTTATCATATTCATCATCATCACTATCCTCTTCTTCTTCTCTTAAGCTATTCCCAAACCACCCTTTCTCCTCAAAGTCCCTTCCTTTCAACACTCCTAAACCCTTCTCCCTCAGATGCCGTCACTCTGACCTCTTCGATCAGAACACCTTAGCCTCTACACCACGACCAACGAGACCCTCTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACATTGACTCCTAGGCCCCCCGAATTCATGCCACTCGATTCGGGGGCATACAAAATATCTAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCGGCAGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTTTTTTCCTTATCAGTGGGTGAAATGGGAAGTGTGATTAGTCTTGGTGCAAGGGACTCTTATGAATTTTTTCATGATCCTTTTAAGGGTAAAAGTGATGAAGGTAAAGTCAGAAAATTTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGACACTTCTTTAACCTAAGTGTTCAAAACAAGCTTGTGAATGTGGATGAAAGCATCTATATCCCTGTTACAAAGGCTGAGTTAGCAGTTTTGACCTCAACTTTCAATTTTATCATGCCATACCTTCTGGGTTGGCATACCTTTGCAAACTCCATAAAGCCAGAAGATAATGGAGTGAATGATGCTAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAG 801 0.4332 MSNLQLQIHSPTPSLLSYSSSSLSSSSSLKLFPNHPFSSKSLPFNTPKPFSLRCRHSDLFDQNTLASTPRPTRPSASVGALPPRVYVGYSIYKGKAALTLTPRPPEFMPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGARDSYEFFHDPFKGKSDEGKVRKFLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPVTKAELAVLTSTFNFIMPYLLGWHTFANSIKPEDNGVNDANPRYGGDYEWNR* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1015 266 Pfam Whirly transcription factor 91 225 IPR013742 GO:0003697|GO:0006355|GO:0006952
Gso18g1015 266 SUPERFAMILY ssDNA-binding transcriptional regulator domain 83 266 IPR009044 GO:0003677|GO:0006355
Gso18g1015 266 Gene3D Transcriptional Coactivator Pc4; Chain A 76 249 IPR009044 GO:0003677|GO:0006355
Gso18g1015 266 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 1 266 - -
Gso18g1015 266 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 1 266 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1015 Gso-Chr18 16328220 16331563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1015 13 266 Whirly Transcription Factor Family AT1G14410 63.922 9.25e-114 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Gso18g1015 Whirly 3.2e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1015 - - gmx:100789252 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0369 1 4687669 4692275 Gso18g1015 18 16328220 16331563 PCT