Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1009 ATGTTTGGCGACATGGGAAGACAAAGTCCTGGAAAATGGATCAGAAACTTACTTCTGGGGAAGAAATCATCATCAAAGTCTAAGTCTTCAAGAGAGAAAGATATTTATAAACCTTCAAGTAACAAGGATGTTCTGGTGGTGTCTTCCGAGACATCCATGTCTACTCCAACATCTGGAGCCAATGCTATTAAAGGAGTGCTATCAGAAAAGGAAGTAGTTAGTGTATCATCAAATGATGGGGTAATTCTTTCAATTGAAGACAAACAGGACAAAGCACAATCACTCGCTAATATTGGTTCTGGGGACCATCATGAAAAAATCGGGCAAATAGAAGCAGCTATAATAGTTCAGGCTGCTATTAGAGGCTATCAGGCGCGTGGGACATTTAAAACTCTCAAAAGTGTCATACCACTGCAAGCTTATATTCGTGGCCTGTTGGTTCGACGACAAGCTGTTTCTGCTTTATATTGTGTGCAGTCAATAGTTAAATTTCAAGCATTGGCTCGTGGGTACAAGGTTAGGCACTCCGATGTTGGGCTTGCAGTCCAGAAAATTTTTAAGGATACTAAACTTCCGAATTTTATTGGAGTAGATTCAACCACACAGGCAGGGAAGCTCTCGGATAGTATCTTTATTAACAAGCTTCAGGCTTCATCACCCTCTTCTGTTTCTCCAAATCTCAAATATAATGCTGGTGAACCTAACTTGGCTTGGGAGTGGCTTGATCGCTGGACGAAATCACACTTTTGGGTACCTCTTCGAGAAGCGCGGAAACCTGATTCAATGTCTGATAAGAAAAATGGAAGTTGTCAAATAGTTGAAACTAACAAGGGTCAAGTTAAAAGAAATGCCAGGAAAGCACCTTCTGTGAGGGCTGGTGATGATTCAGTTTCAGATTCTAACAAACATAAATGCTATCCGAAAAAGGATTCAAACCTCCCATTGCATTCAGCCAAGGAACATCCACAAAAGGATCTTGAGAAAAGGAGTTCTAAAAAACCTCAAATTCAGAATGGTTTTGATAAATCCGAGGTTGCTAATAAGAAAAGAACACACATCACAAGAACAGTTTCAGATCATACAACAGTCACTGATGTTCAAGAGGATGATGCTGGTGCTCCTTCAAAGAAGTTGGAAGGTTTGGCAGTGTCAGAGTCAAAACAGTCTGATCTTGAAAAAAGTTTAGGACAGCAAACAGAAGAGCATGATACTAATGAGTCATGTAACGATACTAATGCTCCCTTGCAGTCTAGCTTGGTGAATGGTAAAGATGGAGAATTCATTGAGGACTTGAATAATGTAAATTCAAAGAATTTCCAGAGAAGAGCTTCCCTGCCAGCTAATTTTGCAGATCATGAAAATCTGTTACATAATAACACTCCAAGACGCCCTAGTTATATGGCTCCCACTGAATCTACAAAAGCTAAGCTAAGAGGACATGAACAAGGCTCTCCAAGGTCTGTTAGCGATTTGGCGGACGTAAGTAGTATAACCAGGCGGCTTTCACTTTCGTCTTCGCTTAATGGCAAGCTAGGTTCATTCCCTCCATGGTCAGATAGATTGGCTGCCTTGAGCAACAAGATAAGGACCAACAGATCTCTATCATCTTCAAAGGATGGCACTGATAAATTGATCCAACCTAAGTGGAGAAGGTGA 1656 0.4082 MFGDMGRQSPGKWIRNLLLGKKSSSKSKSSREKDIYKPSSNKDVLVVSSETSMSTPTSGANAIKGVLSEKEVVSVSSNDGVILSIEDKQDKAQSLANIGSGDHHEKIGQIEAAIIVQAAIRGYQARGTFKTLKSVIPLQAYIRGLLVRRQAVSALYCVQSIVKFQALARGYKVRHSDVGLAVQKIFKDTKLPNFIGVDSTTQAGKLSDSIFINKLQASSPSSVSPNLKYNAGEPNLAWEWLDRWTKSHFWVPLREARKPDSMSDKKNGSCQIVETNKGQVKRNARKAPSVRAGDDSVSDSNKHKCYPKKDSNLPLHSAKEHPQKDLEKRSSKKPQIQNGFDKSEVANKKRTHITRTVSDHTTVTDVQEDDAGAPSKKLEGLAVSESKQSDLEKSLGQQTEEHDTNESCNDTNAPLQSSLVNGKDGEFIEDLNNVNSKNFQRRASLPANFADHENLLHNNTPRRPSYMAPTESTKAKLRGHEQGSPRSVSDLADVSSITRRLSLSSSLNGKLGSFPPWSDRLAALSNKIRTNRSLSSSKDGTDKLIQPKWRR* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1009 551 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Gso18g1009 551 Gene3D - 109 156 - -
Gso18g1009 551 ProSiteProfiles IQ motif profile. 133 160 IPR000048 GO:0005515
Gso18g1009 551 Pfam Protein of unknown function (DUF4005) 457 515 IPR025064 -
Gso18g1009 551 MobiDBLite consensus disorder prediction 343 375 - -
Gso18g1009 551 PANTHER IQ-DOMAIN 5-RELATED 5 548 - -
Gso18g1009 551 MobiDBLite consensus disorder prediction 454 493 - -
Gso18g1009 551 MobiDBLite consensus disorder prediction 257 415 - -
Gso18g1009 551 MobiDBLite consensus disorder prediction 528 551 - -
Gso18g1009 551 Pfam IQ calmodulin-binding motif 159 174 IPR000048 GO:0005515
Gso18g1009 551 Pfam IQ calmodulin-binding motif 111 126 IPR000048 GO:0005515
Gso18g1009 551 Pfam IQ calmodulin-binding motif 134 150 IPR000048 GO:0005515
Gso18g1009 551 SMART iq_5 156 178 IPR000048 GO:0005515
Gso18g1009 551 SMART iq_5 131 152 IPR000048 GO:0005515
Gso18g1009 551 SMART iq_5 108 130 IPR000048 GO:0005515
Gso18g1009 551 MobiDBLite consensus disorder prediction 296 335 - -
Gso18g1009 551 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 5 548 - -
Gso18g1009 551 MobiDBLite consensus disorder prediction 528 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1009 Gso-Chr18 16197211 16203158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1009 5 551 IQD Protein Family AT1G14380 30.807 6.45e-55 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1009 - - gmx:100794768 1020.76