Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1005 ATGGGTAATTGTCTAGATTCTTCAGCTAAAGTAGAAGCAGCTCACAGTTCCAGAACCCCTTCTGGAATTTCAAAAACTAGTCCTTCATCTGTTCCTTCCAACTTATCTATTCTGTCATATAGTGAAGCAAGTGATTTCTCAAATCTTCCCACACCGAGGTCCGAGGGTGAAATCTTGTCTTCCCCAAATCTTAAGGCCTTTACCTTTAACGAGCTAAAGAATGCCACCAGGAACTTTCGCCCCGACAGCCTTCTTGGTGAAGGAGGATTTGGTTTTGTTTACAAGGGGTGGATTGATGAACACACACTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTTAAGAAACTCAAGCCTGAAGGGTTACAGGGTCATAAGGAGTGGCTGACTGAAGTGGACTACCTTGGACAACTTCACCATCAGAATCTGGTAAAATTGATTGGATATTGCGTGGAGGGAGAGAATCGGCTGTTGGTATATGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGAGGACCACAACCTCTTTCTTGGTCAGTGAGGATGAAAGTAGCCATTGGTGCTGCCAGAGGACTTTCTTTTCTTCATAATGCCAAATCACAAGTTATATACCGTGATTTTAAAGCATCCAATATCCTACTAGACGCAGAGTTCAATGCTAAACTCTCTGATTTTGGCTTAGCAAAGGCTGGCCCTACGGGTGATAGAACTCATGTCTCTACTCAAGTCATGGGAACTCAAGGATACGCAGCACCTGAATATGTTGCAACAGGTCGGCTGACAGCTAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTATTGTCCGGTAGACGTGCCGTTGACAGATCAAAAGCCGGTGAAGAGCAGAATCTAGTAGAATGGGCAAAACCATATTTGGGTGACAAAAGAAGACTATTTCGGATTATGGACACCAAGTTGGGTGGCCAATACCCACAAAAAGGAGCCTACATGGCTGCCACTCTTGCTCTAAAATGCCTTAATCGCGAAGCTAAGGCAAGGCCTCCAATGACAGAGGTTTTAGAAACCCTTAAACAGATTGCAACCTCAAAACCTGCAGGAAGAAACTGCCAATTAGAACAAAAGAGAGTCCATGCTCCTGACAGAAAGTCTAGTGTGCAAAAAGGGTCCCATTTGAATCATACTCCTACTGCATTCCCATAA 1209 0.4376 MGNCLDSSAKVEAAHSSRTPSGISKTSPSSVPSNLSILSYSEASDFSNLPTPRSEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGFVYKGWIDEHTLTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCVEGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRSKAGEEQNLVEWAKPYLGDKRRLFRIMDTKLGGQYPQKGAYMAATLALKCLNREAKARPPMTEVLETLKQIATSKPAGRNCQLEQKRVHAPDRKSSVQKGSHLNHTPTAFP* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1005 402 CDD STKc_IRAK 85 362 - -
Gso18g1005 402 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Gso18g1005 402 MobiDBLite consensus disorder prediction 366 402 - -
Gso18g1005 402 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Gso18g1005 402 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1005 402 MobiDBLite consensus disorder prediction 1 33 - -
Gso18g1005 402 PANTHER OS01G0588500 PROTEIN-RELATED 11 402 - -
Gso18g1005 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Gso18g1005 402 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 11 402 - -
Gso18g1005 402 Gene3D Transferase(Phosphotransferase) domain 1 165 385 - -
Gso18g1005 402 MobiDBLite consensus disorder prediction 376 390 - -
Gso18g1005 402 MobiDBLite consensus disorder prediction 10 33 - -
Gso18g1005 402 Pfam Protein tyrosine and serine/threonine kinase 83 359 IPR001245 GO:0004672|GO:0006468
Gso18g1005 402 SUPERFAMILY Protein kinase-like (PK-like) 54 359 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1005 Gso-Chr18 16053168 16056668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1005 57 365 Glycoside Hydrolase AT3G07070 53.205 3.51e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso18g1005 PK_Tyr_Ser-Thr 7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1005 - - gmx:100802537 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1005 18 16053168 16056668 Gso13g0516 13 17580878 17585156 GST
Gso18g1005 18 16053168 16056668 Gso14g0340 14 3057723 3061929 PCT
Gso14g0340 14 3057723 3061929 Gso18g1005 18 16053168 16056668 PCT