Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1004 ATGGTGCAAGATATGAAGCAGCAGGACAATGGAGAATCTAAGAAGAAGGAGCGTCACATTGTGACTTGGACTCAACAGGAGGATGATATACTAAGAGAGGAGATTGGTATTCATGGAACTGAGAATTGGGCAATTATTGCATCTAAGTTCAAAGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAAAAAGGTGGATGGTCAGCTGAGGAAGACATCCTCTTATGTGAGGCTCAAAAAATATTTGGTAATAGATGGACAGAAATAGCAAAGGTGGTCTCAGGCAGAACGGATAATGCTGTTAAAAATCGTTTCTCCACACTCTGCAGGAAGAAACAAAAATATGAAGCTTTAGCAAAAGAGAACAGCACATCATACATCAATTCAAATAACAAGAGGGTGATGTTCCAACATTGTAATAATATGGATACAACATCAGAATCTGGAGTACCTATTAAGAATTTGAGGAGGACCCATATCCATTATAATGCAGAAAAGATCAAATTTGAGGACCGATTACATTTACGAAATGAAACTCCAATAAATCAGCAACCAAGAGCACCACTTGCAGTCTTGGCTCAAAACTCTCATAACTCAAACAACTTGCCAGACCAGCATCATGTTTGCAATCCCAAGTTTAGCAGTTTGGCCCAAAATTACAAGATTCAAGGAACATTTCTCAAAAAAGATTACCCAAAGATTAGTGCATTGATGCAACAGGCGGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATGCAGGGAACATGGACCAAAGTTTTGAAAACGCATGGAAGGTTCTTCAAGAGTTTCTGAAGCGAACCAAAGAATCAAATATCCCTGGACAAAAGATTCCAGATTTACAGCTTGTAGATCATAAAGATATGATTGAGGAGTTGAAGAGTGGTAATGAGGAAGGCCAGGTTCTTCAGGAGCTTCTGAACCGAACCAAAGAATCAGATAACGCTGGACATAATATTCCAGATTTACAGCCTGTAGATCTTAAAGATATGATTGAGAACTTGAAGAGTGGTAATGAGGAAGGCCTGGTACTTCAGGAGTTTCTGAACCAAACCAACAGAGCAGATATCCCTGAACATAAGATCCCACATTTATGGCTTGTAGATCATAAAGATATGATTGAGAAATTTAAGAGTGGTAATGAGGAAGGCCAGGTTCTTCAAGAGTTTCTGAACAGAACCAAAGAATCAGATATACCTGGACATAAGATTCCAGATTTACAGCTAGTAGATCTTAAAGATGTGATTGAGGACTTGAAGAGTGGTAATGAGGAAGGCCAGGCTTGTTGGAGGCAAGTGGACCGTTATGAAGACTCTCCAGGCAGTTCTGGATATAGTACAGGATCAATTCTCCTGTGTGAGTCAGCTGGTGATAATCTGGAGCCTTCATTTCATCAGGATATTGGAACTGAATTGAAGTCTGAACAACTTGAAGATGAGAAAGGAGTAGGTAGAGATGATGGGAAAGTGGTTCTGTCTACTTTAAATGTAGATCAAGATACGTTACCGTGTTTTGAGGAACAGATAAACAATGATGGGATTGTTTCTGCCTCATCAAGATTGGAGTTCAGCTCCCCTCTTCAAGTAACCCCTCTGTTTAGATCCTTGGCAGCAGGAATTCCCAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCTTGAGGAAAACACTAGGAATGGAATCTCCATCCATCAACCCAAGTGCCAACTCATCACAACCGCCACCCTGCAAAAGAGCCCTACTACCTAGTCTATAA 1797 0.4012 MVQDMKQQDNGESKKKERHIVTWTQQEDDILREEIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDILLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKQKYEALAKENSTSYINSNNKRVMFQHCNNMDTTSESGVPIKNLRRTHIHYNAEKIKFEDRLHLRNETPINQQPRAPLAVLAQNSHNSNNLPDQHHVCNPKFSSLAQNYKIQGTFLKKDYPKISALMQQAELLSSLALKVDAGNMDQSFENAWKVLQEFLKRTKESNIPGQKIPDLQLVDHKDMIEELKSGNEEGQVLQELLNRTKESDNAGHNIPDLQPVDLKDMIENLKSGNEEGLVLQEFLNQTNRADIPEHKIPHLWLVDHKDMIEKFKSGNEEGQVLQEFLNRTKESDIPGHKIPDLQLVDLKDVIEDLKSGNEEGQACWRQVDRYEDSPGSSGYSTGSILLCESAGDNLEPSFHQDIGTELKSEQLEDEKGVGRDDGKVVLSTLNVDQDTLPCFEEQINNDGIVSASSRLEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLRKTLGMESPSINPSANSSQPPPCKRALLPSL* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1004 598 CDD SANT 22 66 IPR001005 -
Gso18g1004 598 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Gso18g1004 598 SMART sant 19 68 IPR001005 -
Gso18g1004 598 SMART sant 71 119 IPR001005 -
Gso18g1004 598 PANTHER TRANSCRIPTION FACTOR MYB88 6 315 - -
Gso18g1004 598 PANTHER TRANSCRIPTION FACTOR MYB88 413 595 - -
Gso18g1004 598 Gene3D - 12 71 - -
Gso18g1004 598 PANTHER MYB PROTEIN-RELATED 413 595 - -
Gso18g1004 598 PANTHER MYB PROTEIN-RELATED 6 315 - -
Gso18g1004 598 MobiDBLite consensus disorder prediction 572 590 - -
Gso18g1004 598 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Gso18g1004 598 SUPERFAMILY Homeodomain-like 45 125 IPR009057 -
Gso18g1004 598 CDD SANT 75 116 IPR001005 -
Gso18g1004 598 ProSiteProfiles Myb-like domain profile. 23 66 IPR001005 -
Gso18g1004 598 Gene3D - 74 146 - -
Gso18g1004 598 Pfam Myb-like DNA-binding domain 23 83 - -
Gso18g1004 598 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 66 IPR017930 -
Gso18g1004 598 MobiDBLite consensus disorder prediction 570 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1004 Gso-Chr18 16021100 16027515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1004 399 445 MYB Transcription Factor Family AT2G02820 51.020 7.24e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g1004 Myb_DNA-bind_6 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1004 K09422 - gmx:100793723 1210.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1004 18 16021100 16027515 Gso1g0383 1 4881761 4889137 PCT