Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0997 ATGTCTAGCAGAAGATCTCGTTCGAGTCAATCGGATGTTTCCACTGAGATCACTGATGCCCAGATCACTGATATCATCTCAAAGTTACAACAACTAATCCCTGAACTAGATGCAAGGCGTTCAGACAAGGTTTCAGCTTCCAAGGTGTTGCAGGAGACTTGCAACTACATCAAAAGCTTGCACAGAGAGGTTGATGATCTAAGTGACCGGTTGTCACAACTTTTGGCCACCACAGATTCCAACAGTGCCCAAGCAGCCATAATTAGAAGCTTACTTTTGTAA 282 0.4397 MSSRRSRSSQSDVSTEITDAQITDIISKLQQLIPELDARRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLL* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0997 93 Coils Coil 57 77 - -
Gso18g0997 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Gso18g0997 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 92 - -
Gso18g0997 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 82 IPR036638 GO:0046983
Gso18g0997 93 Gene3D - 19 89 IPR036638 GO:0046983
Gso18g0997 93 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Gso18g0997 93 Pfam Helix-loop-helix DNA-binding domain 21 61 IPR011598 GO:0046983
Gso18g0997 93 CDD bHLH_AtPRE_like 17 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0997 Gso-Chr18 15792584 15794060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0997 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 64.894 3.04e-33 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso18g0997 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0997 - - gmx:100800940 166.007