Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0990 ATGGCTGATCATCAGAAAACCGCTCCTGGCGAGAGAGACATCGAGCAGGCAATTATATCTCTTAAGAAAGGCTCATATCTGCTGAAGTACGGGCAAAGAGGGAAGCCAAAGTTCTGTCCATTTAGGCTTTCCAACGATGAGTCTCTACTCTTATGGTACTCTGGCAAGGACGAGAAACAGCTTAAGCTCAGTACAGTTTCAAGGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCACGGCCTGAAAAGGAATATCAGTCATTTTCTCTTATATACAATGATAGGTCCTTGGATTTGATATGCAAGGATAAAGATGAAGCTGAAATCTGGTTTGCTGGTCTTAAGGCATTAGTTACTCGAGGTAACAACCACAAGTGGAGATTTGAATCAAGAACTGACGATAGTCTGTATTCTGATAGTCCAAAATCTGGCACACGAAGATCCACTCCGTCCATTGCACCATTCTCTGACCCTGGGGATGCTGGTGGAGGTTTTATTGACTTGCAAAATAGATGGATAAAGGCTTTCTCTGAAATAATTTCTTACTCTGCAGCTAGCAAGAGTTCCAGTCAAGCTGAATCACTTGCAAATTCCTCTTTATCCTCTGGGTCTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTATCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCCTAGGTGATGTTTTTATTTGGGGAGAAGGGATCGCCGATGGAATTCTTGGTGGTGGTGTACATAGAGTTGGAGCCTTATCTAGTTCTGAGATGGATGCATTCCTTCCCAAGGCATTGGAATCAAAGTTAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAGACATGCTGTTCTAGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTTTTCACCCTAAGCTCATTGACACCCTCGGTGGCATGAATATTGAGTTAGTAGCATGTGGAGAATATCATACTTGCGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTGCTCACAATTCTGGCATGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCCAAGAAAGTAGGTGGTAACTTGGAGGGCTTACGTGTATTATATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTCACATTTGGTGATGGAACTTTTGGTGCCTTAGGACATGGAGATCTTAGTAGCGCAAATATTCCTCGGGAAGTAGAAAATTTGAAAGGGTTGAGAACAACCAGGGTTGCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGGTAAATGAATCTGTGGAATCTTCTACACGCTCATCTAGTGGAAGACTGTTCACCTGGGGTGATGGAGATAAAAGCCAACTTGGACATGCTGATAGGGAACCTAGACTAGTTCCTGAGTGTGTAAATGCATTGAGTACTGAAAACATTTGCCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACGTCAGGACGTTTATATACAATGGGAAGTACAGCGTATGGACAACTTGGCTGTCCTGCATCTGATGGGAAAGTCCCTACATGTGTTGAAGATATAATTTCTGATAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAGTGATCACAGGAATAAACCAACACTTGTTGAGTTCTTAAAAGATAAACAAGTGAAAAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCTTCATAAATGGATACCAAGTGTTGATCATTCTGCTTGTGTTGGATGTCGCAATTTATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTATTTTGCAAATCATGCACCAGCAAGAAATCTATAAAAGCTTCCCTTGCTCCCAATTCCAACAAGCCGTATAGAGTCTGTGATGATTGTTATCTTAAACTTAGGAAAGCTGCCATTGAATCAGTACCCTCAGTGCAAACACCTAGCTTGAGATGCGTAAGTTTGCAAGACAATAGAATCACTAAAATACAGGGAACACTACTAAGGCTTGCATCTTTTGGTTCTATTATTCAAACAGAAAGTAGTCAATCAAAGCTTCCAGATTCACAAGATAGCCATCTTTTCCCATCTTTAAATGGAAAATTGCAGATGAGGGATTTTGCTCCTTCAAAATCATCAAATTCTCTTTCTATGGATTCCAAGAAACACCTTTCAGTTTCTGAGCCCGCTGCAAGAATATCTTGTCAATCAATGTCACCAGTTTCATCAAAGTCAAGTCCAAGACAATCTTATGAAGATATAAATGATGATTTAAAGTACAGAAATGATATTTTAAGTCTAGAAGTTATAAGTTTAAGGACACTGGTTGAAGAGCTTACTCACAAGTCAAAAATTTTAGAGGCTGAACATGAGAGAACATCAACGCAATTGAAGGAAATGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAGCCATTAACTGCACAGTTGAAAGAAATGGTGGAAAGACTGCCAGAAGGACATAATACTGACTCCAGTACAGAGCCCTTTGCTGAAAACACTAGTAGCATTCTACATAATTCCTTAGATGAGAGCCATATAAGAAACACCGTCATTCCCAAAAATGAAGGCAGCAGCATTGTAACAAATCTGATATTAGCTAATGGTACCAAAACACAAAGTGGAAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTATGTAAGTTTGTCCTCACAGCCAGGTGGTGGTAATGAGCTTAAGCGTGTCCGCTTCAGTCGAAGGCATTTCACAGAAGAGCAAGCTGAAAAATGGTGGGCTGAAAATGGAACCAAAATATTGGAGCGGCACAATATAGTTGCTTTATTGAATGCAAGAGAATCTGTTCCCTGA 3078 0.4139 MADHQKTAPGERDIEQAIISLKKGSYLLKYGQRGKPKFCPFRLSNDESLLLWYSGKDEKQLKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFAGLKALVTRGNNHKWRFESRTDDSLYSDSPKSGTRRSTPSIAPFSDPGDAGGGFIDLQNRWIKAFSEIISYSAASKSSSQAESLANSSLSSGSVDNSSNRNSASEAFRVSLSSAVSSSSQGSYHEDFDSLGDVFIWGEGIADGILGGGVHRVGALSSSEMDAFLPKALESKLVLDVHSIGCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVFHPKLIDTLGGMNIELVACGEYHTCAVTYSGDLYTWGDGAHNSGMLGHGNEVSHWIPKKVGGNLEGLRVLYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDLSSANIPREVENLKGLRTTRVACGVWHTAAVVEVVNESVESSTRSSSGRLFTWGDGDKSQLGHADREPRLVPECVNALSTENICRVACGHSLTIALTTSGRLYTMGSTAYGQLGCPASDGKVPTCVEDIISDSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDSDHRNKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSACVGCRNLFNFRRKRHNCYNCGLVFCKSCTSKKSIKASLAPNSNKPYRVCDDCYLKLRKAAIESVPSVQTPSLRCVSLQDNRITKIQGTLLRLASFGSIIQTESSQSKLPDSQDSHLFPSLNGKLQMRDFAPSKSSNSLSMDSKKHLSVSEPAARISCQSMSPVSSKSSPRQSYEDINDDLKYRNDILSLEVISLRTLVEELTHKSKILEAEHERTSTQLKEMTAVAADEAGKCKSAKEVIKPLTAQLKEMVERLPEGHNTDSSTEPFAENTSSILHNSLDESHIRNTVIPKNEGSSIVTNLILANGTKTQSGKAEWVVQDEPGVYVSLSSQPGGGNELKRVRFSRRHFTEEQAEKWWAENGTKILERHNIVALLNARESVP* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0990 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Gso18g0990 1025 SUPERFAMILY FYVE/PHD zinc finger 635 702 IPR011011 -
Gso18g0990 1025 MobiDBLite consensus disorder prediction 796 815 - -
Gso18g0990 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Gso18g0990 1025 SUPERFAMILY RCC1/BLIP-II 243 636 IPR009091 -
Gso18g0990 1025 CDD PH_PLC_plant-like 12 122 - -
Gso18g0990 1025 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1011 - -
Gso18g0990 1025 MobiDBLite consensus disorder prediction 795 819 - -
Gso18g0990 1025 MobiDBLite consensus disorder prediction 136 163 - -
Gso18g0990 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 479 530 IPR000408 -
Gso18g0990 1025 MobiDBLite consensus disorder prediction 140 155 - -
Gso18g0990 1025 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 639 701 IPR017455 -
Gso18g0990 1025 Gene3D - 13 130 IPR011993 -
Gso18g0990 1025 SMART fyve_4 631 702 IPR000306 GO:0046872
Gso18g0990 1025 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Gso18g0990 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 584 631 IPR000408 -
Gso18g0990 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 478 527 IPR000408 -
Gso18g0990 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Gso18g0990 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 530 579 IPR000408 -
Gso18g0990 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Gso18g0990 1025 Pfam Regulator of chromosome condensation (RCC1) repeat 358 409 IPR000408 -
Gso18g0990 1025 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1011 - -
Gso18g0990 1025 Pfam Transcription factor regulating root and shoot growth via Pin3 957 1012 IPR013591 -
Gso18g0990 1025 Gene3D - 469 640 IPR009091 -
Gso18g0990 1025 Coils Coil 842 862 - -
Gso18g0990 1025 Gene3D - 185 462 IPR009091 -
Gso18g0990 1025 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Gso18g0990 1025 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Gso18g0990 1025 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Gso18g0990 1025 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Gso18g0990 1025 PRINTS Chromosome condensation regulator RCC1 signature 520 538 IPR000408 -
Gso18g0990 1025 PRINTS Chromosome condensation regulator RCC1 signature 578 599 IPR000408 -
Gso18g0990 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Gso18g0990 1025 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Gso18g0990 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 709 IPR013083 -
Gso18g0990 1025 ProSiteProfiles BRX domain profile. 958 1013 IPR013591 -
Gso18g0990 1025 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Gso18g0990 1025 Pfam Transcription factor BRX N-terminal domain 872 900 IPR027988 -
Gso18g0990 1025 Pfam FYVE zinc finger 635 701 IPR000306 GO:0046872
Gso18g0990 1025 SUPERFAMILY PH domain-like 13 121 - -
Gso18g0990 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 531 582 IPR000408 -
Gso18g0990 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
Gso18g0990 1025 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 583 634 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0990 Gso-Chr18 15417834 15429452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0990 874 1014 Major Intrinsic Protein MIP AT1G31880 30.726 2.48e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0990 - - pvu:PHAVU_003G066900g 1465.29