Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0967 ATGGAAGAGAGAAATCATGATGGTGAGAAACTAGATGAGGTTATGCTACCGGGTTTTAGGTTTCATCCAACTGATGAGGAGCTTGTTGGATTCTACCTGAAGAGAAAGATTCAGCAGAGGCCACTCTCTATTGAGCTCATCAAGCAGCTAGATATCTACAAGTACGATCCTTGGGATCTTTCAAAAATGGCCACCACTGGGGAGAAAGAGTGGTATTTCTTCTGCCCCAGAGACAGAAAGTACAGGAACAGTGCAAGGCCAAATAGGGTAACAGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATCGCCCTATCTATTCCTCGGAGGGCTCTAAGTGTATTGGCCTCAAGAAATCTCTAGTATTTTACAAAGGAAGAGCTGCAAAAGGGATCAAAACTGATTGGATGATGCACGAATTTAGACTACCTTCTCTCACTCACCCATCCTCAGACCCCAAGAAGTACATGGACAAGACTATTCCTGCTAACGAATCCTGGGCAATCTGCAGGATCTTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTATCTCACTCTTGGGTCTCTCCCTTACCTGAAACCACAACTACTTCTGATCATAGAGATGGCAACCAACTTTGCCAAGCAAACATGCCATTCACAAAGAAAACTAGCTTAGCCAGCCAGTTTTATACTTTCAATCATAATGAATCACAACACTCAACCACTACTAGTACAACTCCTTGTCCTTTAGATGTTGTAGCCTCTTACAACAAACCACTTATTAATCCATTAATGCTCTACAAACCCTCAGATCGGTTACCCTTTTCAAATGGAGACCTAATTAGCAGTGGCGTGATATTCTCATCTCTTGAAACCTCAACAACCAGTGCTAAATCTTCAACGGATGCTTCTTCCTTGCTACTGAGTACATCATCTTCTGTGCTTGGAGATTTTAGTAAGACCTCTGAGGGAACAATAACCACAAACTTTGGTGGGTTACAAGAGCATGGTAATGGCTACCAAATACCATTACTACGTGACAACATGCAAGGAAACTTCGGCAACCACGATGACAATGCGTTGGGGAAGATTCCTAATGTGAATGTGGTACCTCGTGTTGGTGACCAACAATTGGAGACAGTGCGATCCATTGGGTTTCCATTCAATATTGGCGATGCATGGAAGCCTAATATGCTTTGGGATACTTCCTCTTTGTCCTTGTGA 1206 0.4337 MEERNHDGEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLSKMATTGEKEWYFFCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTHPSSDPKKYMDKTIPANESWAICRIFKKTNATAQRALSHSWVSPLPETTTTSDHRDGNQLCQANMPFTKKTSLASQFYTFNHNESQHSTTTSTTPCPLDVVASYNKPLINPLMLYKPSDRLPFSNGDLISSGVIFSSLETSTTSAKSSTDASSLLLSTSSSVLGDFSKTSEGTITTNFGGLQEHGNGYQIPLLRDNMQGNFGNHDDNALGKIPNVNVVPRVGDQQLETVRSIGFPFNIGDAWKPNMLWDTSSLSL* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0967 401 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Gso18g0967 401 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 399 - -
Gso18g0967 401 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Gso18g0967 401 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Gso18g0967 401 PANTHER PROTEIN FEZ ISOFORM X1 1 399 - -
Gso18g0967 401 SUPERFAMILY NAC domain 14 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0967 Gso-Chr18 14796632 14799496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0967 1 313 NAC Transcription Factor Family AT1G26870 57.187 2.77e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso18g0967 NAM 2.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0967 - - gmx:100815365 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0967 18 14796632 14799496 Gso8g2550 8 42825455 42831742 GST
Gso18g0967 18 14796632 14799496 Gso14g0262 14 2297343 2301106 PCT
Gso18g0967 18 14796632 14799496 Gso2g2413 2 48728614 48731960 PCT
Gso14g0262 14 2297343 2301106 Gso18g0967 18 14796632 14799496 PCT
Gso2g2413 2 48728614 48731960 Gso18g0967 18 14796632 14799496 PCT