Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0964 ATGTCACGCACTGATACGATGACGACTTCGGATCTTAATAGAACTGGTCCCGTGGAAAGAGACATTGAGCAGGCTATTACTGCTTTAAAAAAAGGGGCTTACTTGCTCAAGTATGGAAGGAGAGGGAAGCCCAAGTTTTGTCCCTTTCGGCTTTCCAATGATGAATCTATTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGGATTATATCTGGACAACGCACGCCAATCTTTCAAAGATATCCGCGGCCCGAGAAGGAGTACCAGTCATTTTCTCTCATTTACAATGATAGATCATTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCGTTAATTTCTCGCAGCCATCACCGGAAGTGGAGACCAGAGTCAAGAAGTGACGGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCTTTTGGTAGTAACGAAAGCTTGCAAAAGGACAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCTAAGAATGGTTTGGATAAAGCATTTTCTGATGTGATTTATTATCCTATTCCTCCAATGGGTTTCTTCCCTCCAGATTCTGCCAGTGGTTCGCTCCACTCTGTGTCATCAGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGCCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGGGATGTTTTCATTTGGGGGGAAGGCATGGGTGATGGTGTATTGGGTGGTGGGGTTCACCAAGTTGGGAGTAATTTTGGTGTCAAAATGGATTCTCTGTTGCCTAAAGCCTTGGAATCAGCAGTAGTTCTTGATGTGCAGAATATTGCTTGTGGTGGGAAACATGCTGCCTTGGTGACCAAACAAGGTGAAGTTTTTTCCTGGGGGGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCTGATGTTCCTCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACGTGGGGTGATGGCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCTTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTTACCTCTTCGGGGCAATTATTTACTTTCGGCGATGGTACATTTGGTGCTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCTAGGGAAATAGAGTCCCTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCTGTTGTGGAGGTCATGGTTGGAAATTCGAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTTGTGACTCTTGATGAACATAATTTTTGTCAAGTTGCTTGTGGTCATAGTATGACTGTAGCACTTTCTAGATCACGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCAATCCGTGTTGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTTCACGTGGGGGAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACTAATGATAGAAACACCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACTGCAGCCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAGTCCATGTGTTCTGGCTGCCGTGTGCCATTCAATTTCAAAAGGAAACGCCACAATTGTTATAACTGTGGACTTGTTTTTTGTCATTCATGCAGTAATAAGAAATCTGTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGGAAAACTACAGAAACTGATTCTTCATCTCAGTCTTCTATGAGCAGAAGAGGAAGTCTTAATCAGGGGTGGTCACTTCAGTTTAATGGTAAGGATGATAAATTGGATTCCAGATCTCATAATCAACTTGCCAGGTTTTCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGATCTTCAAAGAAAAACAAAAAATTGGAATTCAACAGTAGCCGTGTCTCACCTGCTCCAAATGGTGGTTCCCAGTGGGGAGCAATGAATATTTCTAAATCTTTTAATCCTGGTTTTGGATCATCGAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACTCCAACCCCAACACTGGGGGGACTTTCATCCCCAAAGATGGTTGTGGATGATGCTAAGAGAATCAATGATAACCTCAGTCAGGAGGTTGTTAAATTAAGATCGCAGGTGGAAAACCTGACTCGGAAAGCCCAGCTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAGTTGAAAGAAGCAATAGCAATTGCAAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTCACTGCGCAGTTGAAGGACATGGCTGAGAGGCTACCCGTAGGAGCATCCAGGAATGTCAGATCGCCACCCTCTCTTGCTTCCTTTGGCTTAAATCCTGGTTCCAATGACCTTACTAATGCTTCCTTCGATCGATTGAATATACAAGCAACAAGCCCAGAATCAGACTCAACTGGATCCACTAACCAGATACTTTCAAATGGATCAAGCACCATCACCAACCGGAGTGCAGGTCACATTAAACACAGTCAATCGGATGCAATTAGCAGAAATGGTAACAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTTACCTCCCTACCAGGAGGAGTAATAGATCTTAAAAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCAGAGAATCGGGCAAGAGTATATGAACAATACAACGTGCGCATGATTGACAAGTCGACAATTGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3324 0.435 MSRTDTMTTSDLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESILIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRPESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVIYYPIPPMGFFPPDSASGSLHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGMGDGVLGGGVHQVGSNFGVKMDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEVFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGALGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVTLDEHNFCQVACGHSMTVALSRSRHVYTMGSCVYGQLGNTQADGKLPIRVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGRLGHGDTNDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLVFCHSCSNKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQSSMSRRGSLNQGWSLQFNGKDDKLDSRSHNQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPAPNGGSQWGAMNISKSFNPGFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLSSPKMVVDDAKRINDNLSQEVVKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGASRNVRSPPSLASFGLNPGSNDLTNASFDRLNIQATSPESDSTGSTNQILSNGSSTITNRSAGHIKHSQSDAISRNGNKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTIGVGSEDLAH* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0964 1107 CDD FYVE_like_SF 667 720 - -
Gso18g0964 1107 MobiDBLite consensus disorder prediction 984 1034 - -
Gso18g0964 1107 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 662 724 IPR017455 -
Gso18g0964 1107 SUPERFAMILY FYVE/PHD zinc finger 658 729 IPR011011 -
Gso18g0964 1107 PRINTS Chromosome condensation regulator RCC1 signature 314 327 IPR000408 -
Gso18g0964 1107 PRINTS Chromosome condensation regulator RCC1 signature 333 349 IPR000408 -
Gso18g0964 1107 PRINTS Chromosome condensation regulator RCC1 signature 383 399 IPR000408 -
Gso18g0964 1107 PRINTS Chromosome condensation regulator RCC1 signature 424 440 IPR000408 -
Gso18g0964 1107 PRINTS Chromosome condensation regulator RCC1 signature 440 454 IPR000408 -
Gso18g0964 1107 PRINTS Chromosome condensation regulator RCC1 signature 543 561 IPR000408 -
Gso18g0964 1107 PRINTS Chromosome condensation regulator RCC1 signature 601 622 IPR000408 -
Gso18g0964 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 424 434 IPR000408 -
Gso18g0964 1107 Coils Coil 869 945 - -
Gso18g0964 1107 MobiDBLite consensus disorder prediction 136 194 - -
Gso18g0964 1107 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 1093 - -
Gso18g0964 1107 Gene3D - 21 137 IPR011993 -
Gso18g0964 1107 SUPERFAMILY RCC1/BLIP-II 269 659 IPR009091 -
Gso18g0964 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 556 602 IPR000408 -
Gso18g0964 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 501 550 IPR000408 -
Gso18g0964 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 331 379 IPR000408 -
Gso18g0964 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 437 486 IPR000408 -
Gso18g0964 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 607 654 IPR000408 -
Gso18g0964 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 382 434 IPR000408 -
Gso18g0964 1107 MobiDBLite consensus disorder prediction 768 809 - -
Gso18g0964 1107 CDD PH_PLC_plant-like 20 130 - -
Gso18g0964 1107 Gene3D - 499 670 IPR009091 -
Gso18g0964 1107 Gene3D - 250 498 IPR009091 -
Gso18g0964 1107 Pfam FYVE zinc finger 658 724 IPR000306 GO:0046872
Gso18g0964 1107 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 20 1093 - -
Gso18g0964 1107 MobiDBLite consensus disorder prediction 984 1025 - -
Gso18g0964 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 731 IPR013083 -
Gso18g0964 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 554 605 IPR000408 -
Gso18g0964 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 553 IPR000408 -
Gso18g0964 1107 Pfam Pleckstrin homology domain 23 129 IPR001849 -
Gso18g0964 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 317 327 IPR000408 -
Gso18g0964 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 383 437 IPR000408 -
Gso18g0964 1107 SUPERFAMILY PH domain-like 21 129 - -
Gso18g0964 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 438 489 IPR000408 -
Gso18g0964 1107 MobiDBLite consensus disorder prediction 145 174 - -
Gso18g0964 1107 Pfam Unstructured region between BRX_N and BRX domain 962 1031 - -
Gso18g0964 1107 MobiDBLite consensus disorder prediction 727 747 - -
Gso18g0964 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 476 486 IPR000408 -
Gso18g0964 1107 SMART fyve_4 656 725 IPR000306 GO:0046872
Gso18g0964 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 269 330 IPR000408 -
Gso18g0964 1107 Pfam Transcription factor BRX N-terminal domain 920 952 IPR027988 -
Gso18g0964 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 382 IPR000408 -
Gso18g0964 1107 MobiDBLite consensus disorder prediction 792 809 - -
Gso18g0964 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 606 657 IPR000408 -
Gso18g0964 1107 ProSiteProfiles BRX domain profile. 1034 1089 IPR013591 -
Gso18g0964 1107 MobiDBLite consensus disorder prediction 837 865 - -
Gso18g0964 1107 Pfam Transcription factor regulating root and shoot growth via Pin3 1033 1088 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0964 Gso-Chr18 14720152 14740243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0964 929 1098 Major Intrinsic Protein MIP AT1G31880 34.254 4.26e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0964 - - gmx:100791947 2086.23