Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0961 ATGGAAGAAGCAACTGAGTTCCACTCTGAAGAAAATAAATTGTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCGGCCCAGCTTAAGGGCTTGGAAGATTTTTATAATGATAACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCCGATGAGTTAGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAAATGTTGAATGATGAAGTATGTGCTAATGGACGACATGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGTTGACTATAGGTATCTGGATCCCAAAGAGGTTGAGAGCCATGGCCTCTATAACCATGGATTTTCAGCTGCAGATATGATGTATGGTCACAATAACCATCATTATACAGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCCTCTTTACAAGACCGATTGCTTCGTCAAGGAAAGGATCTGTATGATATGGAGCCTTCAAGTCATCTTACACCTAATGGATCTCTTCCGCCTCTCAATATCAAGGGTGCAAATAACTTGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGAGATATAGAACATGCTGCTATTACTGCTGTTAAAAAGCAATTAGGAAAGCATTATCGGGAAGACGGTCCACTACTTACTGTTGAATTTGATACAATTCCTCCTGAGGCATTTGAATGCCAAATTGCAGATCTAGCTAATGAAGCATACTATGCTGCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCTGTGAAAAAACAATCCAGTCTTAGTTCTAAATATGATTCATATTTTACCAAAATCAGTTCCCAAGATTCACATATGGACAGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCTTCCAGGTTATAAATCAAAGGCAAAATTTTCAGAGTTTTACCAATCCTTTGCCTCACAAGAACTCTTCCCTGGATTTGAATGCAGACTCTACTGGGGAAGCATCTGCTTATAATAACATAAAAAATCGTAGAAAGGGTACTAAACATGGTTTTGATGGGGTGAGATATGATTCTGCTTCTAACCCTAGTGATCACTATGAAGAGAATAATAACCTTGCGGTTAAGCAGACAGATTCTCTGCTACATGGCTATGAAAACAGCAATCTGAAGAATGTACAAAGGAGTGAATATGTGAAATCTAAACCTTCCAATTCAGTACATAAGTCTCAAATTTACTTGGATACTGAAGAAAGAAGAGGGCTTAATAAAAGGATGGCAAAGGAAGAGAAGTTTGATGGGGATAGAAAGGTAAAAAAACAATATCGTGATCCAGATGAAGTTAGGGCGCTTACAAATGAAATGATGGTTGCAAAGCGGGCTAAAGTTGATCCACTTGAACAATATGATGTTAAACAATCATCTGTTGCTGAGTTGGAACCAAGAAAAAGTCAAAGGTCTGCTGCAGAGATGCCATCTAGCTTTAGTGAGGATGAAACGGCTGAAACCAGTTCCTCAGCGGATTAA 1584 0.3889 MEEATEFHSEENKLSMEKNKKRRLKTPAQLKGLEDFYNDNKYPTEEMKSELADELELTEKQISGWFCHRRLKDKKMLNDEVCANGRHDRSSGVIQDRGSGLVQDSCGSTKHVDYRYLDPKEVESHGLYNHGFSAADMMYGHNNHHYTENDSATDNTSSESSSSLQDRLLRQGKDLYDMEPSSHLTPNGSLPPLNIKGANNLGYKPSGYLKVKGDIEHAAITAVKKQLGKHYREDGPLLTVEFDTIPPEAFECQIADLANEAYYAANPALPNSPEVSAVKKQSSLSSKYDSYFTKISSQDSHMDRGDFGSLHDSDFQDKKSFQVINQRQNFQSFTNPLPHKNSSLDLNADSTGEASAYNNIKNRRKGTKHGFDGVRYDSASNPSDHYEENNNLAVKQTDSLLHGYENSNLKNVQRSEYVKSKPSNSVHKSQIYLDTEERRGLNKRMAKEEKFDGDRKVKKQYRDPDEVRALTNEMMVAKRAKVDPLEQYDVKQSSVAELEPRKSQRSAAEMPSSFSEDETAETSSSAD* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0961 527 MobiDBLite consensus disorder prediction 144 165 - -
Gso18g0961 527 MobiDBLite consensus disorder prediction 506 527 - -
Gso18g0961 527 MobiDBLite consensus disorder prediction 480 527 - -
Gso18g0961 527 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 527 - -
Gso18g0961 527 MobiDBLite consensus disorder prediction 444 464 - -
Gso18g0961 527 CDD homeodomain 20 76 IPR001356 GO:0003677
Gso18g0961 527 Gene3D - 9 90 - -
Gso18g0961 527 SMART HOX_1 18 80 IPR001356 GO:0003677
Gso18g0961 527 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Gso18g0961 527 MobiDBLite consensus disorder prediction 1 27 - -
Gso18g0961 527 MobiDBLite consensus disorder prediction 143 165 - -
Gso18g0961 527 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 527 - -
Gso18g0961 527 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Gso18g0961 527 Pfam Homeodomain 20 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0961 Gso-Chr18 14679173 14684275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0961 3 527 Homeobox Transcription Factor Family AT4G03250 38.889 8.61e-79 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso18g0961 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0961 - - gmx:100812697 1010.75